Chroicocephalus ridibundus (black-headed gull): 134508548
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Entry
134508548 CDS
T10910
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134508548 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134508548 (SKIC3)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
134508548 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_14
TPR_8
TPR_11
TPR_12
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_9
TPR_15
ANAPC3
ARM_TT21_C
TPR-S
BTAD
Imm71
TPR_30
DUF928
Fis1_TPR_C
Retrotran_gag_2
ARM_TT21
TPR_5
HAT_Syf1_M
TPR_20
Motif
Other DBs
NCBI-GeneID:
134508548
NCBI-ProteinID:
XP_063176418
LinkDB
All DBs
Position
Z:1288120..1341928
Genome browser
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKPNQTDVRGDLADVYQKLLQLYESGDKQKWYDVCN
KLVELYHQEKKYLEVAETWQKLIQMKQEEGAEKAELHQFWKKMIQLLKDSTQNQDNKAEQ
SLLTAFEHAVNSADTVPGEDHQNLYKDFIQCLSKFPHETARLEKACHDMMALYPTVSYPL
EVLCLHFVQSGTLSEEALDCFSRLLEMDASSGPGIIGFGIKCLQEKKYGEAVKSLTEGLQ
KTSECPAAWHYLAEAQMKIHKHRDAVLSCNQAFKALGTPEGPSLRWKNRILQLKAEALIK
IADADAAEEAIQSLEQIVDASSDPVVLALRGRAYLNKGLMDQASKISQELLSSHSDLAES
HALEGFIHYSQKNYEQAERSFLNAIERKDETAEYHQYLGLTYWFMSDETKKDKGKALTQF
LKAAKLDTYLGRVFCYLGNYYRDIAGDKSRARGCYKKAFELDGTDEESGTAAVDLSVELG
DMDTALSILNEVTEKASTGGAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCWE
SLGEAYLSRGSYSTALKSFRKASELNPELVYSVYKAAAVEQILGKYENAIATYQQILKKT
EDYVPALKGLGECYLMLARSALDDYLDRKAVDYIEQALEFFTRATKLRPDVSCLWKLLGD
TCTSVHVISPTKVNVQVLGSLLGKDAGKEMLKKSELLRLGGRCYGRALKLMPLPSIWCDL
GINYYRQAEDLTAVGTDMNEITELLEKSLQCLKKAVRLDSKNHLCWNALGVVASCSAIGN
YALAQHSFIKSVQAEQINVVAWTNLGVLYLSTGNIEQAHEAFKIAQSLEPSYLLCWIGQA
LIAESVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKSNRNTELYLYNIVQMNAV
PAAQVVMSKYTERNPDDASAFTMLGYLNEYLDLKRQAADAYERAASLLKNSEDTEKYHMA
MQNYGRSLCALGQCDKAIEVYTSIPLTEFDAIVGIALAYFKKGLLQESMKAYEKALSVAE
SEQDKAHILTALAIIEYKQNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDATLATA
ALKELLKHEKGDDSIYERCLIACAVYALQGRNVEVQREVSKAIHSNPDNPALWSLLSQLV
PLYASQKAKGGAVAGTIAHVLDVNHGKEVLLNIAVNQLAAGCHMLEDEKNNPLKNIQKAV
HLCPDNPAAWAVLMAACHAENTVVCLTNAQPKRTDLEMTLVSTVSAKTGKNNLPHNYIRN
LEDWCLCQAITSLEETGKLSEAEALCTKGLKSCPEHPALFLLLRQIQCKQLLQSHKELPD
NVLEELHKTVMTSSTSVAAWQWLAKVYQSQRMMVGAEMCYRKSLQLASQQGSWNGKLSSL
LRLAMLALEVYMADVSNEHWPSLVQEATTEALKLSSCPLAALLQALLQYNRKMGARETRR
MLERVVYQPGNPETIVSVARWYLLQHLYAKDDHELIHVLVENAKANGDVRALELNEKLSA
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcattgaagagtgctcgagatgcaatacggaataaa
gaatataaggaagccttaaaacattgcaaggcagttttgaagcaagaaaaaaataactac
aatgcttgggtattcattggcctggcagctgctgagttggagcagcctgatcaggccaaa
ggtgcatataagaaggctattgaacttgaaccaaaccagttactggcgtggcagggatta
gcaaatttatatgagaaacctaaccaaacagatgtcagaggagacttagcagatgtttac
caaaagctcttgcaactctatgaaagtggtgacaagcagaaatggtatgatgtatgtaac
aagcttgtggaactatatcatcaggaaaagaaatatttagaggtggctgaaacatggcag
aaactaatacaaatgaaacaggaggaaggtgcagaaaaggcagagcttcatcagttttgg
aagaagatgatccagttactgaaagacagcacacagaaccaggataataaggctgagcag
tcgcttttgaccgcatttgaacatgcagtgaactctgctgacactgttcctggtgaagac
caccaaaatctttacaaggactttattcagtgcttgtcaaaatttcctcatgaaacggcc
aggttggaaaaggcctgtcacgatatgatggctttgtatcctactgtgagttatccttta
gaagtactttgcttgcactttgttcagtcaggtactctgtcagaagaggccctggactgt
ttttctaggcttttggagatggatgcaagtagtggtccaggcatcatcggttttggtata
aaatgcctccaagaaaagaaatacggggaggctgttaagagtcttactgaaggtttgcag
aagactagcgagtgtccagcagcatggcattatttggcagaggcacagatgaaaattcac
aaacacagggatgctgtcctgtcctgcaatcaagcttttaaggctcttggaactcctgag
ggtcctagtcttcggtggaagaaccgtatccttcagttgaaagcagaggctttgattaaa
atagctgatgctgatgctgcagaagaagccattcaatcacttgagcagattgtggatgca
agcagtgacccagtggttttagctctcagaggtcgggcttatctaaacaaaggtttaatg
gaccaagcttcaaagatttcacaagagcttctgtcgtcccactctgatctggcagagtcc
catgctctggagggtttcatccattattcccaaaagaactatgaacaggcagaaagaagt
tttctaaatgctattgaaagaaaggacgaaactgcagagtatcatcagtacctgggactc
acatactggttcatgagtgatgagacaaaaaaagacaaaggaaaagcactcactcagttc
ttgaaggctgcaaaattggacacctacttgggacgtgtcttttgttatttaggtaactac
tacagagacattgctggagacaaaagtagagctcgtggttgctataaaaaggcttttgaa
ctggatggaaccgatgaagaatctggaacagcagctgtagacttaagtgtggaacttgga
gacatggacactgctctgtcaatcctgaatgaggtaactgaaaaagcaagtactggtgga
gcaaaatgggcctggcttcatcgtggactttactacctgagaactggtcagccgtcacaa
gcagtggctgatttgcaggcagctctcagggctgatccaaaggattccaactgctgggag
tctctaggggaggcttacttgagcagaggtagctattcaacagctctgaaatccttcagg
aaagcaagtgagctgaacccggagcttgtgtacagcgtctacaaagctgcagcagttgag
cagattctaggcaaatacgaaaacgctatagctacctatcaacaaatcttaaagaagaca
gaagattatgtgcctgcactaaaaggacttggtgagtgctatctcatgctggcaagatca
gcccttgatgactatcttgataggaaggctgtggattacatagagcaggcccttgaattt
tttacaagggcaacaaagctccgtcctgatgtctcttgcctctggaagctgcttggagat
acctgtactagtgtgcatgttatttcaccaactaaagtgaatgttcaagttctaggatcc
cttctgggtaaagatgcaggcaaagagatgctaaagaaaagtgagctgctcagactggga
ggaaggtgttacggcagagctttaaaattgatgcctttgcctagcatatggtgtgatctt
ggaataaattattaccgacaagcagaggacctcacagcagtgggcactgacatgaatgag
atcactgaactgctagaaaagtctttacagtgtctcaaaaaagctgtgaggcttgacagc
aaaaatcatctttgttggaatgcacttggcgtagttgcttcctgtagtgctattgggaat
tatgctcttgctcaacattcgttcatcaaatctgttcaagctgagcaaatcaatgttgtt
gcctggaccaacttaggggttttgtatctgtcaactggaaacattgagcaagctcacgaa
gccttcaagatagcccagtctctggagccttcttacctactgtgttggattgggcaggct
cttattgcagagagcgtaggcagctacgatactatggatctcttcaggcacacaactgaa
ctcagtatgcatactgagggagcaaaaggttatgcccactgggtatgttcaacgctgcag
gataaaagcaacagaaacactgaactatatctgtacaacattgttcaaatgaatgctgtt
ccagcagcccaggtggtcatgagcaaatatacagaaagaaatccagacgatgcatctgct
ttcacaatgcttggttatttgaatgagtatctggatctaaaaaggcaggcggcagatgcc
tatgagagggcagcttcattgctgaagaactctgaggatactgagaaataccacatggca
atgcaaaactatggcaggtcactgtgtgcccttggtcagtgtgataaggccattgaggtt
tacacatccatacccctaactgagtttgatgccattgtggggatagcgttagcctacttc
aagaaaggactcttacaagaaagtatgaaagcctatgaaaaagccttgtctgttgctgag
tctgaacaagataaagcacatatcctgactgccttggcaataatagaatataaacagaat
aaagtggatgctgcgaagacactgctgtttaaatgctcattaaaggaacctagtacggaa
agtctgaaggctttgtgcacactaggactggtaaagcaggatgctacgcttgcgacagca
gccctaaaagaattactgaagcatgaaaaaggggacgacagcatttatgagaggtgcctt
attgcatgtgctgtttatgcattgcaaggtagaaatgtggaggtccagagagaagtctcc
aaagcaatacacagtaaccctgataatcctgccctctggtctcttctgtctcaactagtt
ccactgtatgcatcacaaaaggcaaaagggggagctgtggcaggaaccattgcacatgta
cttgatgtaaaccatggaaaggaagtcctgctcaatattgcagttaaccagttggcagca
ggatgtcacatgttagaagatgagaaaaacaatcccctgaaaaatattcagaaggcagtc
cacctctgtccagataatcctgctgcctgggcagtgctaatggcagcctgtcatgctgaa
aacaccgtagtctgtctaactaacgcccagccaaagcgaacggatctcgagatgacactt
gtatctacagtttcagccaaaactggaaaaaataaccttccacataattatatccgcaat
cttgaagactggtgtctgtgtcaagctattaccagtctagaggagactggtaaactctca
gaagctgaagctctttgtaccaagggtttaaaaagctgccctgagcacccagctctgttt
ttgcttttgagacaaattcagtgtaagcagctgttgcagtctcacaaagagcttccagac
aacgtcctggaggagcttcacaagacagtcatgaccagttcaacttcagttgcagcctgg
caatggctggcaaaagtctatcagtctcaaagaatgatggttggagcagagatgtgttac
agaaagagtctgcagttggcgtcacagcagggcagctggaatgggaagttgtccagcctg
ctcaggctcgctatgctcgcactggaagtctacatggctgatgtctcaaatgagcactgg
ccatccttggttcaggaggcaacaactgaagctttgaagctttcttcttgccccctggca
gctctcctacaagccctgctgcagtataatcgcaaaatgggagcaagggagactcgtcga
atgttggaaagagtggtatatcaaccaggtaatccagaaaccatagtgtcagtggcacgc
tggtacctcctgcaacatctgtatgccaaagatgatcatgaattaatacacgtgcttgta
gaaaatgccaaagctaatggagatgttcgcgctctggaactaaatgagaaattgtcagca
agtgcctag
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integrated database retrieval system
