KEGG   Chroicocephalus ridibundus (black-headed gull): 134509053
Entry
134509053         CDS       T10910                                 
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03420  Nucleotide excision repair
crid04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:crid00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    134509053 (ERCC8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    134509053 (ERCC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:crid04121]
    134509053 (ERCC8)
   03400 DNA repair and recombination proteins [BR:crid03400]
    134509053 (ERCC8)
Ubiquitin system [BR:crid04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     134509053 (ERCC8)
DNA repair and recombination proteins [BR:crid03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      134509053 (ERCC8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD_LRWD1 Beta-prop_EML ANAPC4_WD40 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR11_1st Beta-prop_Vps41
Other DBs
NCBI-GeneID: 134509053
NCBI-ProteinID: XP_063177588
LinkDB
Position
Z:64967697..64998332
AA seq 399 aa
MLGFISARQAGLDDPVRLRRAESTRRVLSLELNKDRDVERIHGSGINTLDIEPVEGRYML
SGGSDGVIVLYDLENLSRKPNYTCRALCSVGRSHPDVHRFSVETVQWYPHDTGMFTSSSF
DKTLKIWDTNTLQPADVFHFEGTVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSCSH
ILQGHRQEVLAVSWSPRHEYILATASADSRVKLWDVRRASGCLSTLDQHNGEKSKAASES
ASTAHNGRVNGLCYTNDGLHLLTIGTDDRMRLWNSSTGENTLVNYGKVCNESRKGLKFTV
SWGCNPEFAFVPYGSTIAVYTIFTGELITMLRGHYSTVNCCVLQPNFQELYSGSKDCNIL
AWIPGLREPVPDDLSEKSPPQQHLNPAYEDAWSSSDDEG
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgctggggttcatttcggctcgtcaggccgggctcgacgatccagtgcggctgcgccgg
gccgagtccacgcggagggttctaagtttggagctaaataaagatagagatgtggaaaga
atacatgggagtggtatcaacacccttgatattgagcctgttgagggaagatacatgtta
tccggtggatcagatggtgttattgtactctacgacctcgaaaacttgagcagaaaacca
aattacacgtgtagagcactttgctctgtgggaaggagccatcctgatgtacatagattc
agtgtggagacagtccagtggtatcctcatgacactggcatgtttacatccagctcattt
gataaaaccttgaaaatatgggatacaaatactttacagcctgcagatgtatttcacttt
gagggaacagtgtatagccatcacatgtctccagttgctacaaagcattgtttaatagca
gttggtaccaaaagccccaaagtacagctctgtgacttgaagtctggatcctgttctcac
attctgcagggtcatcggcaagaggtacttgcagtgtcttggtcaccacgtcatgagtat
attttggcaacagcaagtgctgatagtagagtaaaattatgggatgtgaggagagcatct
ggatgtctgagtacacttgatcagcacaatggagaaaaatccaaagctgcttctgagtca
gcaagtactgctcacaatgggagagttaatggtttatgctatacaaatgatggacttcat
ctgttgaccattggtacagatgatcggatgcgactttggaacagctctactggcgaaaac
acgttagtgaattatgggaaagtctgtaatgaaagtagaaaaggactcaaattcaccgtc
tcctggggctgtaatccagagtttgcctttgtaccatatggtagtaccattgctgtttac
acaattttcacaggagagctgataacaatgcttagggggcattatagtactgtcaactgc
tgtgtacttcaacctaattttcaggaactttatagtggtagcaaagattgcaatatcctt
gcatggataccaggtcttcgagagccagttcctgatgacctttctgaaaagtctccacct
caacagcatttaaatccagcatatgaagatgcatggagcagcagtgatgatgaaggctga

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