Chroicocephalus ridibundus (black-headed gull): 134509143
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Entry
134509143 CDS
T10910
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134509143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134509143
03041 Spliceosome [BR:
crid03041
]
134509143
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134509143
Spliceosome [BR:
crid03041
]
Complex B
Other components
Prp19-related factors
134509143
Complex C
134509143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
HAT_Syf1_CNRKL1_N
TPR_19
Suf
ARM_TT21
ARM_TT21_C
CCDC84
TPR_16
Motif
Other DBs
NCBI-GeneID:
134509143
NCBI-ProteinID:
XP_063177694
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
RRVPVSPEEVELELRLARFEQLMARRPLLLNSVLLRQNPHNVHEWHKRVQLYQGRPEQII
HTYTEAVRTVDPFKATGRPHGLWVAFARFYEDNGQLDDARTILSKATRVRFRQVEDLAAV
WCEFGEMELRHHNYEEALRILRKATALPAKRAEYFDSTEPVQNRLYKSLKVWSMLADLEE
SLGTFQSTKAVYDRILDLRIATPQIVINYGLFLEEHGYFEESFKAYERGIALFRWPNVAD
IWHTYLSKFVARYGGRKLERARDLFEQALDGCPPKYAKTIYLLYARLEEEFGLARHAMGV
YERATRAVLPAQRHDMFNIYIKRAAELYGVTHTRPIYQKAIEVLGDDAARELCLRFADME
CKLGEVDRARAIYTYCSQICDPRITATFWQTWKDFEIRHGNEDTIRELLRIKRSVQATYN
TQVNFMASQMLKVYSNATGTVSDLAPGQSGLDEMKLLEQRAEQLAAEAQRDGPPRKDKVL
FVRAEAPREAVAALSQQGNPEEIDLGDEDEPEPDG
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
cgccgtgtccccgtgtccccagaggaggtggagctggagctgcgcctggcgcgtttcgag
cagctgatggcgcgtcgcccgctgctgctcaacagcgtcctgctgcgccagaacccccac
aacgtccacgagtggcacaagcgcgtccagctctaccagggccgccccgagcagatcatc
cacacctacacggaggccgtccgcaccgtggaccccttcaaggcgacggggcgtccccac
gggctctgggtggccttcgcccgcttctacgaggacaacgggcagctggacgacgcccgc
accatcctgagcaaggccacgcgggtgcggttccggcaggtggaggacctggccgccgtc
tggtgcgagttcggggagatggagctgcggcaccacaactacgaggaggcgctgcgcatc
ctgcggaaagccacggcgctgccggccaagagggccgagtacttcgactccacggagccc
gtccagaaccgcctctacaagtccctcaaggtctggtccatgttggccgacctggaggag
agcctgggcaccttccagtccaccaaggcggtgtacgaccgcatcctggacctgcgcatc
gccaccccccagatcgtcatcaactacgggctcttcctggaggagcacggctacttcgag
gagagcttcaaggcctacgagcgcggcatcgcgctgttccgctggcccaacgtggcggac
atctggcacacctacctcagcaagttcgtcgcccgctacggggggcgcaagctggagcgg
gcccgcgacctcttcgagcaggcgctggacggctgccccccaaaatacgccaagaccatc
tacctgctgtacgcgcggctggaggaggagttcgggctggcgcgccacgccatgggggtg
tacgaacgcgccacccgcgccgtcctgcccgcccagcgccacgacatgttcaacatctac
atcaaacgggcggccgagctctacggcgtcacccacacccgccccatctaccagaaggcc
atcgaggtgctgggtgacgacgcggcgcgggagctgtgcctgcgcttcgccgacatggag
tgcaagctgggggaggtggatcgggcccgcgccatctacacctactgctcccagatctgc
gacccccgcatcacggccaccttctggcagacctggaaggactttgagatccgtcacggc
aacgaggacaccatccgggagctgctgcgcatcaagcgcagtgtccaggccacctacaac
acccaggtcaacttcatggcctcccagatgctcaaggtctacagcaacgccaccggcacc
gtgtcggacctggcgccgggtcagagcgggctggacgagatgaagctgctggagcagcgc
gcggagcagctggcggccgaggcccagcgcgacgggcccccccgcaaggacaaggtcctc
ttcgtccgggcggaggccccccgggaggccgtggccgccctgtcccagcaggggaacccc
gaggagatcgacctgggcgacgaggacgagcccgagcccgacggt
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