Chroicocephalus ridibundus (black-headed gull): 134509533
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Entry
134509533 CDS
T10910
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase rnf213-alpha-like
KO
K22754
E3 ubiquitin-protein ligase RNF213 [EC:
2.3.2.27
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crid04121
]
134509533
Enzymes [BR:
crid01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134509533
Ubiquitin system [BR:
crid04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134509533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_7
AAA
AAA_22
AAA_5
ABC_tran
AAA_14
NB-ARC
ATPase_2
NACHT
Bac_DnaA
Xylo_C
Motif
Other DBs
NCBI-GeneID:
134509533
NCBI-ProteinID:
XP_063178145
LinkDB
All DBs
Position
Unknown
AA seq
2868 aa
AA seq
DB search
MGLVVTTEHLWGWEPVKVLWGGVWAQERGGCRRAAAAETGLGPPPQDGGFWNNHRQPKPG
RSARQNRSAEFPARLSDGARDLPSQRHKLSGSAGRCAPSGDVPCSTLPNTLEHEEQLKKI
LVNSSFSQCPTKVLEVRKQEFEQLEELKKPRCSFLRLCRATEDMIKVDRSTVEKSVMDNE
SFKDQMSVKKFSVDGTSQMEPHVLDIYSNMMQKLDIVEKSQCFRRLWKMRAEQTKATTPE
DHIFSIEDVQEKIYKPAVADLQKTYLSLKDFSITLGTVQSWFKNLLGKKDQLLEEFKILE
DSEGPRNGKAGWMADAVERTENYLTLSKAVNTAKMIDDLQQMLRLEGDFQILSDLTKHLQ
REFKNKRLDFMTQDLMKVKKCLSEIPQGVLDFLRVLLDYSRKGFTSWIKTIIKDKTEIPV
FGDLASISVGENDMDIDRVRFFRDAMAASAPIMLDLSPTAGFEEFSEALSFIREAMAKDK
NLPKKLKDSCDNREWIQTVHDSHGSVERSSISQARSINNNGIFTISAPLKFKATLEDCVS
LRLLNDSEESTSPADQKAKKYSLSQLTELQNKLMLIATKVEQGREEANRFLETLEKVETI
GKLYLELLSIGNILFINWKADIYCNPQQHVKVYTEFGIAGILVQSTRPLLEELDSLSKVM
EHCLVEWKKYLETQRDTYYHLDLFTAHQLFYLCSQLARAQKGIVEPQGLIMLSIIKHDIN
DEDIKKALGDALMTPLDSVNVSAGGEESVTWHDYVIRFPQLVKSLAESGYDESVAKAALQ
SCLSNSPITEQMLMDFAFEQGDDKEVVEELSKLYEETRETFLQKRRKFQTGSRDVDRVSF
STLAHDELAAAFESLPSIYDKVNLLWDAYCKKFAGLVSDKYIGLDVFGETLKHLAALEST
RVERSLPVGFEAGKPLLIMCKEEEMLPNVLFVYRHTEMAPLPSYDEVLVCTPNTEEEEVE
LLVRRALFPGSQDQKIYCLLGADRLVYKVSKQLESHFFRLVHSSSFPNYRFIIFCNAKAH
NSYVITAFDAYKMTFPCYSKTEIQTYLKMHLKVPSGTAPVAQAFEEPYQQNVKFVFSERA
GMGKSLFVDNTIRKVRVQLGGTLPLHKTIRLMESEIDFQFFVEELFSIKESLTDEIHPTI
FQIDVSPVVSKGLYRLLIDLCILRHIQSPDGLVWKCKPSHLYLIEYLVKGKGVSTTRKQE
MSVEMEENFLDLFPTVKCVSPRRVLNLLEDPSSVPPEGLREEQFDQDKLNSEVFQRSYQY
LSRYKQKENLDRFTFVPGRVEGTEKECLACLMEFCQRSNPSWTELSNFTRFLNFQLKKCE
KSVFCSTVVGGEFSGFKTFVIKFMIAMSKDFAMPSLNVSDESVPSEEWKEMDNVLRKYQL
RHKWEQQSHPYIVFHAEDDSREFLGFHINQNFDAIDAYSEAVLERAVTSRNLYRTLALQN
VPFNKKFETLSRTEQLEALCRVFGVKCQEDPDASYQLTLDNTMKMLAIHLRFQCGVPVII
MGETGCGKTKLVQFMCNLQNAGKTIQNMMVVRVHGGTTSKTIQKKVRQAIEXARTNEEEH
NIDMVLFFDEANTSEAIFAIKEVLCDHSVNGKPISTGRLKVVAACNPYKRHSKEAIEKLE
KAGLGYXVRSEDTLEKLGYIPLRQLVYRVRPLPPSLLPLVWDFGELNEKTQSLYIREIVK
STVETQIPEGNLDVFTNVISASQKFLRERKDECRVASLRGIDRCVKIVLWFYELRDLLFH
EIDKKRRHEEEEEPTLNDAQRALVLSLGACYYVSLESRQEYLEEIAKCFSLPASRLKQEI
ELCQEVFLDNLSIPKATACNDALRENIFMMVVCMDLRVPLFLVGKPGSSKSLSKTIAVDA
MEGTLSRSPLFQWCKEIQLVSFQCSPHSKPEGIIFTFRQRAQFQKGKNLNDFASMVLLDE
IGLAEDSPDMPLKTLHPLLEDGCVDDETLEAYKKVGFVGISNWALDPAKMNRGLLVFRTE
PSEKELVKTAEGICADQPHLEKIKHLFPILANFYCNVLKMQKTEFFGLRDFYSLIKMIVS
YTQNMKRGSQDELLIKAIQRNFGGSRDIHPLEIFRNCTSELRLNSAVETSCIRLLEENMD
KEQAAFTSRYLLLLTTNNAAFQIIQMTRLIDTSNCDIIFGSGFPRDQDYSQVCRSVNRVK
ICMEIGRPVVLLNIQNLYESLYDALNQCVLSLGGNYYVGLGLGTHRVKSRVKEEFRLIVI
EEKKVVYTQFPTPLLSRLEKHCLDMNAILSWQQQDLKQDLERWASRFVYIENPDLFRVSS
HTLAPKEYDVFIGFSDDTSATIALECSQHTHCGGYEPYGEQVFSTATSKVVECATPDAIL
RLKYSALKDATQIQDLYFIQQKHNSLASLLSEMMNQQKKEGSTSGLCLPVSTHTRLLNQK
DLEVLRKTFGLLDTIHCLFLSQFDTEHALRQDLRNFFRDSQEARLVLVQFHFDEPQSSKR
LLARAKYCITDERRRSASPHLLHLVLITKVPRVLGGCSYLAFDSGEWKSIHLDDLMPPEN
FKANLGQLSKMTIAEIFTSSSQQKLPPSSPEDSAALGRLTEAGLYPEKNPQFLNVDTMIK
GIIQKAGIQLEDKKDNSQRPMERIKILHNLLFHAQSSGKISSHFMTILKKRICYLLQERE
KPTQEPRAWIFRRALSTEFILEDTSFRQALWVHLEDVVANVFAQILAVVDANNNLDHVSQ
GSLASKLAELWLQMFQEETYLKIKYTQKAADARIPVLSMTEDPNTSLFCQFPFSWVLKAY
LDDIWERVYHMKDQPERPMEEVARFYQSFIKNVLMPDGSHPGMLHYYANDFLRMAFPGQD
LPVYEILSRVFLVSAEQLCSSVGRGRXGFSPIWLHLSHEDQRWLSAEL
NT seq
8607 nt
NT seq
+upstream
nt +downstream
nt
atggggctggtggtgaccacggagcacctatggggctgggagcctgtgaaggtcctatgg
ggtggggtttgggctcaggaacgcggggggtgtcgccgcgcagccgccgccgaaacagga
cttgggcccccaccccaagacgggggtttttggaacaaccatcgtcagccgaagcccgga
cgcagcgcgcggcagaatcgaagcgccgagttcccagctcggctcagcgacggcgcgcga
gacctcccttcccagcggcacaagctctccggctccgcgggacgctgcgctccctctgga
gatgttccctgcagcaccctccccaacaccttggagcacgaggagcagttgaagaagatc
ctggtaaattcctctttctcccagtgtccaacaaaagtgctggaggtcaggaagcaggag
tttgagcaactggaagagctgaagaagccgaggtgctcctttctccgcctgtgccgtgcc
acagaggacatgataaaagtggatagaagtaccgtggagaaaagcgtcatggacaacgag
agttttaaagatcagatgtcagtgaagaagttctccgtcgacggcacgagtcaaatggaa
ccgcatgtcctcgacatttatagcaacatgatgcaaaaacttgacatcgtggagaaaagc
caatgtttccgtaggctgtggaagatgagagcggagcaaaccaaagccaccacgcctgaa
gatcacattttctccatagaagatgttcaagaaaaaatttataagccagccgtcgctgac
cttcagaaaacctacctgtccctcaaagacttctccatcaccctcggcactgtgcagagc
tggttcaagaacctgctgggaaagaaggatcagctcctggaggagtttaaaatcctggag
gacagtgaagggccaaggaatggaaaagctggctggatggcagatgcggtggagaggact
gaaaactacctgaccctctcgaaagcggtcaacactgccaagatgatcgatgatctgcag
cagatgcttcggctggagggcgatttccagattctcagcgacctgacgaaacacctacag
cgggaattcaagaataagcgcctcgattttatgacccaagacttgatgaaggtgaaaaaa
tgtttgagtgaaattccccagggagtcttggactttttgagggtacttctggactattca
aggaaaggttttacctcctggatcaagaccataataaaagacaagacggaaatccccgta
tttggggacctggcatcgatttctgtgggtgaaaacgacatggatatcgacagagtgagg
ttcttccgtgatgccatggctgcttctgcccccatcatgttagaccttagtcccacagcc
gggttcgaggaattctctgaagctctgtctttcatcagagaagccatggcgaaagacaag
aatcttcccaagaagctgaaagattcctgtgacaatcgagaatggatacagacggttcat
gactctcatggctctgtggagcgttcttcgatctctcaagccagaagcatcaacaacaac
gggatttttaccatctcagcacctctgaaattcaaggctactctcgaagactgtgtctca
ttgcgactgctgaatgacagcgaggagagcacatctccagcagaccagaaggccaagaaa
tatagtttgtctcagctgacggagctccagaacaagcttatgttgattgccaccaaggtt
gagcagggcagagaggaggcaaaccgtttcctggagacactggaaaaagttgaaacaatt
gggaagttgtacctggagcttctcagcattggcaatatcctcttcatcaactggaaggct
gatatctactgcaacccccaacaacatgtgaaggtctacacagagtttggaattgccgga
atccttgttcagagcacaagacccctcctggaggagctggatagcctctctaaagtgatg
gagcattgcctggtagagtggaagaagtacctggagactcaaagggacacctactatcac
ctcgacctgttcactgcacaccagctcttctatttatgcagccagctggcccgagcccag
aaaggcattgtagaaccgcaggggctcatcatgctttccatcatcaagcatgacatcaat
gacgaagatatcaaaaaagccctgggggatgcactgatgactcccctggactctgtgaat
gtgtcggcaggaggcgaggaatcagttacctggcacgattacgtcattcgttttccccag
ctcgtcaaaagcttggccgaatcgggctatgatgagtcagtggcaaaggcagccttgcag
agctgcctgtccaactcccccatcacagagcaaatgctcatggattttgcctttgagcag
ggtgatgacaaggaggtggttgaagagctcagcaagttgtacgaggagacgagggaaacc
ttcctgcagaagagacggaaattccagactggcagcagagatgtcgaccgggtttccttc
agcaccctggcgcacgatgagttggccgctgcctttgagagcttgccgtctatttacgac
aaggtgaatctgctctgggatgcctactgtaagaaattcgctggcctggtgtccgataaa
tacataggcttggatgtttttggggagacgctgaagcacttggccgctctagaaagcacg
cgtgtcgagagaagtttacccgtaggctttgaagcggggaaaccgcttctcatcatgtgt
aaggaagaggaaatgttacccaacgtgttatttgtctaccgacacactgagatggcgcct
ctcccatcgtacgatgaggtcctggtgtgcacacccaacacggaggaggaggaggtggag
ctgcttgtcaggagagctcttttcccaggttcccaagaccagaagatctactgcttgctg
ggtgctgatagattagtttataaagtttccaaacaactcgagtcccacttcttccgcctg
gtgcactcttccagctttcccaactacagattcatcatcttctgcaatgccaaagctcac
aattcctatgttatcacagcctttgatgcctacaagatgactttcccctgctactccaag
acagagatccagacctacctgaagatgcacctcaaagtgccgagcgggacagcccccgtc
gctcaagcctttgaagagccctatcagcagaacgtgaagttcgtcttttcggagcgagcg
ggaatggggaagtctctctttgtggacaataccatcagaaaggtccgtgtccagctgggt
ggcacgctaccacttcacaaaaccattaggctgatggagtcggagatcgatttccagttc
ttcgtggaggagctcttctccatcaaggagtccttgactgatgaaattcatcccaccatc
ttccagattgatgtgtctccagtggtatcgaagggtctctaccggctgctgattgacctg
tgcatcctgcggcacatccagagtcctgacggcttagtctggaagtgcaaaccctctcat
ctttacttgatcgagtacctggtgaaagggaaaggtgttagcactacaaggaagcaagag
atgtctgttgaaatggaagaaaattttttggatctttttcctactgtgaagtgcgtatca
ccacggcgggtgctcaacttgctggaagatcccagctctgtccctcctgagggattgagg
gaggaacagtttgaccaggacaagctaaatagtgaagttttccaaaggtcctaccaatac
ctcagcagatacaaacagaaggaaaacctcgaccgtttcacttttgtccctgggagggtt
gaagggacagagaaagaatgcctggcctgcttgatggagttctgccagagaagcaacccc
tcctggactgagctcagcaacttcacgcgcttcttgaatttccagctaaaaaagtgtgag
aagtcggtcttctgcagtacagtggtcggaggcgagttctctggcttcaaaacatttgtc
attaaattcatgatcgccatgtccaaggactttgccatgccttccctcaatgtgtccgac
gaaagtgtgccaagtgaggagtggaaggagatggacaatgttttgagaaagtaccaacta
agacacaagtgggaacaacagtctcacccttatatagtcttccacgctgaggatgattcc
agggaatttttgggtttccatatcaaccagaactttgacgctattgatgcttattccgag
gctgttttggagagggcggttacgagcaggaatttatacaggaccttggcactgcaaaat
gttcctttcaataagaaatttgaaaccttatccagaaccgagcagttggaggccctctgc
agagtctttggtgtgaaatgccaggaagatccagatgcttcataccagctgactctggac
aacaccatgaagatgttggctattcacctgcggttccagtgtggcgtccccgtgatcatc
atgggtgaaactggctgtgggaagacgaagctggtgcagttcatgtgcaacctgcaaaac
gcaggcaagaccattcagaatatgatggtggtgcgtgttcacggcggcaccacctccaag
accatccagaagaaggtaaggcaggccattgagnctgcacgcaccaacgaagaagagcac
aacatagacatggtgctgttcttcgacgaagccaacacctcggaggccatcttcgccatc
aaagaggtgttgtgtgaccacagcgtcaacggaaagccgatttccactggccgcttaaaa
gtggtggccgcttgcaacccttacaaaagacacagcaaggaggccattgagaaactggag
aaagctggcttgggatactgagtccggagtgaagacaccctggagaagctgggttacatt
cctttgcggcagttggtgtatcgggtgcggccccttcctcccagtttattacctctggtc
tgggattttggggagctgaacgagaagacgcaaagcctgtacatcagggagattgtgaag
tccactgtggagacccagatccctgagggaaacctggatgtcttcaccaatgtcatttca
gcctcccagaagttcctgagagagaggaaggacgaatgcagagtcgccagcctccggggt
atagaccgctgcgtgaaaatagtgctctggttttatgagttgagagacctgcttttccat
gagattgataagaagaggcggcatgaggaggaagaggagccaaccttaaatgatgcacaa
agggctttggtcctttcattgggggcctgctattacgtgtctctggagagccgccaagag
tacctggaggagattgcaaaatgcttctcgctccctgcgtcccggctaaagcaagagatt
gagttgtgccaggaggtatttcttgataacctctccattcctaaggccacagcctgcaac
gatgctctgagggagaacatcttcatgatggttgtctgtatggacctccgggtgccgctc
tttctggttggcaagccgggaagctccaaatctctatccaaaaccattgctgtagatgcc
atggaaggtacattgtccagaagcccattgttccaatggtgcaaagagatccagctggtc
tccttccagtgcagcccccactcgaaaccagaaggtatcatcttcactttccgacaacgc
gctcagttccagaagggcaagaacctgaatgactttgcatccatggtcctgctggatgag
atcggtcttgcagaagactcacctgatatgccgttgaagacgctgcatcctcttctggaa
gatggctgcgttgatgacgagacgctggaggcttacaaaaaagttggctttgtgggcatc
tccaactgggccttggaccctgccaaaatgaacaggggcctccttgtctttcggaccgaa
cctagtgagaaagagctggtgaagaccgctgaaggcatctgtgctgaccaacctcacctt
gaaaaaatcaagcatttgttccccattctggcaaacttctactgcaatgtgctgaaaatg
cagaaaacagagttttttgggcttcgtgacttctacagcttaatcaaaatgatcgtgtcc
tacacacagaatatgaagcgcggttctcaagatgagctcctcatcaaggccatccagaga
aactttggaggctccagagatatccatcctctggaaatcttccgtaactgcaccagtgag
ctacgtctcaactctgcggtggaaaccagctgcatccgtctgttggaggaaaacatggac
aaagagcaagcggcattcacgtctcgttacctcctgttgctgacgaccaacaacgctgcc
tttcagatcatccagatgacgcgtctgatagacacgagcaactgtgacattatattcggc
tctggtttcccacgggaccaggattattcccaggtgtgccgctctgtgaacagggtgaaa
atttgcatggagataggcaggcctgttgtcctcctcaacatacagaacctgtatgagagc
ctttatgatgctctcaaccaatgcgtcctcagcctggggggcaattactacgttggcctg
ggccttggcactcatagggtgaagagccgcgtgaaggaggaattccggctgatagttata
gaggagaagaaagtggtctacacacagttccccacccctctgctgagccgtctggagaaa
cattgcttggacatgaacgctatcctcagctggcaacagcaagacctgaagcaggacctg
gaaaggtgggccagtcggtttgtctacattgagaaccctgatttgttcagggtctcgtcc
cacacgctcgctcccaaggaatacgatgtcttcatcggcttcagcgatgacacgtccgcc
accatcgcgctggagtgctcccaacacacccactgtggaggctatgaaccctatggagaa
caggtcttctccactgccacaagcaaagtggtggagtgtgccactcctgatgccatccta
cgcctcaagtactccgctctgaaggatgctacgcagatccaggacctgtatttcatccag
cagaagcacaacagcctggccagcctcttgagtgagatgatgaaccagcagaagaaggaa
gggagcaccagcggactgtgcctgccggtttctactcacaccaggctactaaaccagaag
gatttagaggtgctgaggaagacattcggtctgctggacacaatccactgccttttccta
agccagtttgacaccgaacacgctttacgccaggacctcaggaatttcttcagggactca
caagaagcaagactggtcctcgttcagtttcatttcgatgagccacagagcagcaaaaga
ctgctggcacgtgccaagtactgcatcacagacgagcgacggaggtcggccagcccccat
ctgctgcatcttgtgctgatcactaaagtcccacgggtgctggggggctgcagctacctg
gcttttgacagtggcgagtggaagtccatccacttggatgacctgatgcccccagagaac
tttaaggccaatcttggccagctctccaaaatgaccattgccgagattttcaccagcagc
tcccaacagaagctgccacccagttctccagaggattctgctgccctgggaagactcacc
gaggcgggtctttacccagagaaaaatccacagtttctcaatgtggacacaatgatcaaa
ggcatcatccagaaggctgggatccagctggaggacaaaaaggacaacagccagcgtcca
atggagagaatcaagatccttcacaacttgcttttccacgctcagagcagtggcaagatt
tccagtcactttatgaccatcctgaagaagagaatttgttacctcctgcaagaacgagag
aaacccacccaagagccaagggcctggattttccgcagggcgctgagtactgaattcatc
ctggaagacacatcattcaggcaagcgctctgggtgcacctggaagacgttgtggcgaat
gtctttgcccaaattctcgccgtggtggatgccaacaacaacctggatcatgtctctcaa
ggctctcttgccagcaagctggcagaactgtggctccagatgttccaagaagaaacatac
ctaaaaattaaatacacccagaaggcggcagatgctaggattcctgtgttatcgatgacc
gaagaccccaacacctccctcttctgccagttccccttcagctgggttttgaaagcctac
ctggacgacatatgggagagagtctatcacatgaaagatcagcctgagaggccaatggag
gaagtggccaggttctaccaaagcttcatcaagaacgtcttgatgccagatggcagccac
ccaggcatgctacactattacgccaatgactttctcaggatggcttttcccgggcaagat
ctccctgtctatgagattctctcaagggttttcctagtcagtgcagaacaactctgctcc
tccgtgggcagggggagancgggcttctccccgatttggcttcacctaagtcacgaggac
cagcgttggctttcagcagagctatag
DBGET
integrated database retrieval system
