Chroicocephalus ridibundus (black-headed gull): 134510101
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Entry
134510101 CDS
T10910
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03015
mRNA surveillance pathway
crid03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134510101 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134510101 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134510101 (CPSF6)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
134510101 (CPSF6)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
134510101
NCBI-ProteinID:
XP_063179047
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Position
1:complement(181594412..181627436)
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AA seq
583 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGR
HTKNNTQNSGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgccgatgtgggagaggaattcaaccag
gaagctgaatatggtggacatgatcagattgatttgtatgatgatgtaatttctccatct
gcaaataatggagatgctccagaagatcgtgattacatggattctctgccaccatctgtt
ggggatgatgtaggtaaaggagctgcaccaaatgttgtctatacatatactggaaagaga
attgccttgtacattggaaatcttacttggtggacaacagatgaagacttaactgaagca
gttcattcactgggggtaaatgatattttggagataaaattttttgaaaatcgtgctaat
ggccagtctaaagggtttgctctggttggtgtggggtcggaagcatcctccaaaaagttg
atggatttgttgcctaaaagagaattgcatgggcagaatcccgttgtaactccgtgtaat
aagcaatttctgagtcagtttgaaatgcagtcaaggaaaaccacacaatctggccagatg
tctggggaaggtaaagctggtcccccaggaggaagctcaagagcagcatttccacctagt
aatagagggcgaggtcgttttccaggtgccattccaggtggagacagattccctggacca
gcagggccaggagggccaccaccacccttcccagctggacaaactcccccacgtccacct
ttaggtcctcctggcccgccaggcccaccaggtcctccacctcctggtcaggtcctccca
cctccattagctggacctcctaatcgtggtgaccgtccaccaccaccagttctgtttcca
ggacagccttttggtcagcctccacttgggccacttcctccaggccctccaccaccagtt
ccaggctatgggccaccaccaggtccgccaccacctcagcagggtccacctccacctccg
ggtccatttccccctcgtccgcctggccctcttgggccgcccctaactcttgctcctcct
ccacatctccctgggccacctccaggtgctccaccacctgcaccacatgtgaatccagct
ttcttccccccacctgccaatagtggcatacctacttcagacagccgtggcccacctcca
acagatccgtatggccgacctccaccatatgacagaggtgactatgggccgcctggaagg
cgtttcactggaaataacatgtccataagagaaaaattacatattccattctatgggagg
cacacgaaaaataatactcaaaactcagggagagaaatggatgctgcaaggacacctcta
agcgaagcagaatttgaagaaatcatgaatagaaatagggcgatctcaagcagtgccatt
tcgagagctgtatcagatgccagtgctggtgactatggaagtgctatagagaccttggta
actgcaatttccttaattaaacagtccaaagtatctgcggatgatcgctgtaaagtactt
attagctctcttcaggactgccttcatggaattgagtccaagtcttatggttctggatcc
agaagacgtgagcgatccagagagagggaccatagcaggtcacgagaaaaaagtaggcgc
cacaaatcgcgcagtagagatcgtcatgatgactattatcgggaaagaagccgtgaaaga
gagaggcatcgtgatcgtgacagagatcgtgacagagaacgagacagagagagagagtat
cgccatcgttaa
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