Chroicocephalus ridibundus (black-headed gull): 134510384
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Entry
134510384 CDS
T10910
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03013
Nucleocytoplasmic transport
crid03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134510384 (UPF2)
mRNA cycle factors
P-body specific factors
134510384 (UPF2)
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GFIT
Other DBs
NCBI-GeneID:
134510384
NCBI-ProteinID:
XP_063179694
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Position
1:213528397..213598081
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AA seq
1271 aa
AA seq
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MPAERKKPANMEEKESLLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKIPEDKKKKL
EEDKRKKDDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKLEEEEKKKQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKEAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatctctcttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtcaaggttggcatgaagagagagacgttaaagattcctgaagataaaaagaaaaaactg
gaagaggataaaagaaaaaaagatgacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagaagaggaagaaaaaaagaaacttgaagaagag
gagaaaaagaaactagaggaggaagagaaaaagaaacaagaagaagcggctgcccaattg
aaagaaaaagaggaagcacatcagctccaccaggaagcttgggagcgccatcaggcaaga
aaagagctccgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagactagattccagtctgaagaagaacacagcttttgttaagaagctgaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaacttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatatcagatgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgctatgctgattttgctccttcgttactt
caggcttggaaaaaacattttgaagcaaggaaggaagagaagactcctaacattaccaag
ttaagaactgatctgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctctctttaatctatgagcagcttaaaaatattattaatgctgatcgagaatcc
cacactcatgtttctgttgttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtgccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcactccaagggagagctgagtgaagatcgacacaagcaatatgaggaa
tttgcaatgtcgtatcagaagctgttggcaaattctcaatctctagctgatcttttggat
gaaaatatgccagaccttccccaagagaaaccaacacctgaggaacatggacccggtatt
gatatcttcacgccaggaaaacctggtgaatatgacctggaggggggtatctgggaagat
gaagatgctagaaacttctatgagaatctcatcgacttaaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatgttcccagaacaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcacctgggagcgaggatttggagttggag
ctggagaacctggatattaatgatgatcctctggagctagactgtggagatgaggcagaa
gatcttacaaaaaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttgaaacttatagtagatgcttttcttcagcagcttccgaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagctaacaga
agaaaactagtacgggcgcttttcatagttcctagacaaaggttggatttactaccgttt
tatgcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctttgt
tccatgctgaaaggagatttcagatttcatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aatgatactctccactgtttaaagatgcttctgtcagacttttctcatcaccatattgaa
atggcatgtactctgctggaaacctgtggaagattcctcttcagatcaccagagtctcac
ttaagaaccagtgttcttttggaacaaatgatgagaaaaaaacaagcaatgcatctagat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatcctcctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatattcgtaagcttctttacaag
gatctctccaaggttaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagtaaaagactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtc
ggaatccatgttgtggatggagtgctagaggatattcgacttggaatggaggttaaccaa
ccgaagtttaaccagcggcggatcagcagtgccaagtttctgggggagctttacaattat
cgaatggtggagtcagctgtaatatttcgaactctgtattctttcacatcatttggcgtg
aaccctgatggtagtcctagtccactggatcctccagagcatcttttcaggatcagacta
gtctgtacaatcctcgatacctgtgggcagtattttgacagaggatccagcaaacgaaaa
cttgattgcttccttgtatattttcagcggtatgtttggtggaaaaaaagtctggatgtt
tggacaaaggaccacccgtttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctttgcaattctctggaagaagctatcagacaggtgcaa
gacttggaaagagaattcttaataaaattaggaattgtgaatgacaaagattccaaagat
tccattacggaaggagagaatctagaagaggatgaagaggaagaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctct
gacaatgaggaagaagaaggtgaagaggaggaggaagaaaacacagattatcttacagac
tccaataaggaaaatgaaactgatgaggagaatacagaagtaatgattaaaggaggagga
cttaagcatgtcccttgtgcagaagatgaggacttcattcaggcattggataaaatgatg
ctggaaaatcttcagcaacggagtggcgaatctgttaaagtacaccagttggatgttgct
attcctctacatctcaaaagtcagctcaagaagggtcccccacttggaggtggggaagga
gagtcagagtctggagacacgatgccatttgtcatgttaacacgaaaaggcaacaaacag
cagtttaagatcctgaatgtaccaatgtcttcccaacttgctgcaaaccattggaaccaa
cagcaagctgaacaagaggaaagaatgaggatgaaaaagctcactttggatatcaatgaa
cggcaagaacaagaggactaccaggaaatgttgcagtctctggcacagcgtccggctcca
gcaaatactaatcgtgaacggcggcctcggtaccagcatccgaagggagcacctaatgca
gatctaatctttaaaactggtgggaggagacgttga
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