Chroicocephalus ridibundus (black-headed gull): 134511498
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Entry
134511498 CDS
T10910
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018
RNA degradation
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134511498 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
134511498 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134511498 (LSM5)
03041 Spliceosome [BR:
crid03041
]
134511498 (LSM5)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134511498 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
134511498 (LSM5)
Spliceosome [BR:
crid03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
134511498 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
134511498
NCBI-ProteinID:
XP_063181602
LinkDB
All DBs
Position
2:54377116..54383444
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AA seq
91 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaacgcgaccaccaacccctctcagctactgccgctcgaacttgtggacaaa
tgcataggttcgcgcattcatattgtgatgaagagcgataaagaaattgttggaacgctt
ctagggtttgatgactttgtcaatatggtattagaagatgttacagaatttgagattaca
cctgagggcagaagaatcacaaagctagaccagattttgctaaacggaaataacataaca
atgctggttcctggaggagaaggaccggaagtataa
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