Chroicocephalus ridibundus (black-headed gull): 134511710
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Entry
134511710 CDS
T10910
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134511710 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134511710 (DROSHA)
03009 Ribosome biogenesis [BR:
crid03009
]
134511710 (DROSHA)
03036 Chromosome and associated proteins [BR:
crid03036
]
134511710 (DROSHA)
Enzymes [BR:
crid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
134511710 (DROSHA)
Messenger RNA biogenesis [BR:
crid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
134511710 (DROSHA)
Ribosome biogenesis [BR:
crid03009
]
Eukaryotic type
90S particles
RNase
134511710 (DROSHA)
Prokaryotic type
rRNA processing factors
134511710 (DROSHA)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
134511710 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
YcaO
Motif
Other DBs
NCBI-GeneID:
134511710
NCBI-ProteinID:
XP_063182158
LinkDB
All DBs
Position
2:81044133..81118683
Genome browser
AA seq
1336 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARTSTQTYRPQNLRQLHPQQPSVQYQYDQQTAPPTTYSNPPTT
GYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPAPPPVPNPSN
APVPGTPAGQSTFPYMMPPPAVPHPPPPPVIPQQVNYQPVYSAGYSQQSFPPPNFNSYQH
NSGSFQSSATNSGGGSSHFRHTGQYQGEKSQNDRRSPERSKHYDEHRHREHGHIHGDRHR
STTHGDRRDRGRSPDRRRQESSRHRTDYDRGRLSPHHRSYERSRERERERHRHRDSRRSP
SPDRSYKKDYKRAGSRSPSRERKRPRWEEDRERWSENQSSSKEKNYTAIKDKESEENASE
KNEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAK
AKAARPPWEPPKTKLDEDLESSSDSDCDSEDDSSCSSSSDSEVFDVIAEIKRKKAHPDRL
HEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITV
SPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPE
NFCVRGLELFSSYLFKDILELYDWNLKGPSLENDSICCPRFHFMPRFVRFLPDGGKEVLS
MHQILLYLLRCNKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLD
REQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKL
SQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMH
LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMR
KKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLAT
YRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE
EAKQLFGRLLFNDKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIF
THVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLR
SSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVH
TFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTY
TVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWE
REHQEKEPDETEEARK
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattccgggcgaggatgtccccgtggtcaggggggaccaggagcaagaact
tcaacacagacctaccgccctcagaacctacgtcagcttcacccacaacagccctctgta
caataccagtatgaccagcaaactgcccctccaacaacctattcaaaccctccgaccact
ggttacatgccccccaggccagactttgtgccctatcctcctccagtgccaccttccacg
caaaatcccatcagccagtgtcccatgaggccaccatttccaaaccaccagatgaggcag
agcttccctgtccctccatgcttccctcctgcacctccacccgtgccaaatcctagcaat
gctcccgtgccaggaactcctgctgggcaaagcaccttcccttacatgatgcctcctcct
gcagtacctcatcctcccccgccaccagtcataccacagcaagtcaactaccagcctgtg
tactccgcgggctactcacagcagtcgttcccaccacctaacttcaatagctatcagcac
aactctggctcctttcagagcagcgctaccaacagcggtggcggcagcagccattttcgg
cacacgggtcagtatcagggagaaaagtcacaaaatgatcgacggtctccagagaggagc
aagcactacgacgagcaccgacatcgtgaacacgggcacatccacggtgacaggcatcgg
tccactacccatggggatcgtcgggatcgaggccggagtccggataggaggaggcaggaa
agcagtcggcaccggacagattacgacagaggaaggctatcgcctcatcacagaagttac
gagcgtagcagggagcgggagagggagaggcataggcaccgtgacagcagaagatcaccg
tcgccagacagatcctacaaaaaagattacaagagggcaggaagtcggtctccaagcaga
gagagaaagagaccccgatgggaggaggacagagaaaggtggtctgagaaccagagctcc
agcaaagagaaaaactataccgctatcaaagacaaagaatcggaggagaatgcatctgaa
aaaaatgaagaggaagatgaggaattacttaagccagtctgggttcgctgtactcattct
gaaagctattattccaatgacccaatggatcaagtgggggactctactgtggtaggaaca
agcaagctccgagatctgtatgaaaagtttgatgaggagttaggaaagcgacaggcaaag
gccaaagcagccaggcccccatgggagccaccaaagaccaagctggatgaagatttagag
agctccagtgactcggactgtgactctgaagatgacagcagctgctctagcagttcggat
tcagaagtttttgacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgtctc
catgaagaactgtggtacaatgatccaggacagatgaatgatggacctttgtgcaagtgc
agtgctaaagcacgacgaacaggaataagacatggcatttatcctggtgaagagcccatt
aaaccatgtcgccccatgaccaacaatgctggaagactataccactatcgaattactgtg
tcgcctcccacaaacttcttaacagacagacctactgttattgagtatgacgaccatgaa
tatatctttgaagggttctcaatgtttgcacatgccccactaacaaacattcctctatgt
aaagtaatcagatttaacattgactatacaattcattttattgaggagatgatgcctgag
aatttttgtgtgagaggtcttgagctgttctcttcatatctattcaaagatattttggag
ctctatgattggaatcttaaaggtccttcacttgaaaatgattctatttgctgtcccaga
tttcacttcatgcctcgatttgtgagatttcttccagatggaggaaaagaagtactctca
atgcatcagattcttctctacttgttacgatgcaataaagctctggtgcctgaagaggag
atcgccaacatgcttcagtgggaagaactggaatggcagaaatatgcagaagaatgcaaa
gggatgattgttaccagccctggcatgaaacccagctcggttcgtatcgatcaactggac
cgtgaacagttcaatcctgatgtaattactttccccattattgtccactttgggatacga
cctgctcaactcagttatgctggagatcctcagtaccaaaagctgtggaagagttacgtg
aagctgcgtcacctgctggctaatagtcccaaagtcaaacaggctgataaacagaaatta
tcacaaagagaggaagcactgcagaaaattcgtcagaagaacacaatgagacgcgaagtg
actgttgagttgagtagccagggattctggaaaacagggatacgctctgacgtctgccag
catgcaatgatgcttcctgtcctcacccaccacgtccgctaccatcagtgtttgatgcat
ttggacaaactgataggctacacttttcgagataggtgcttgctgcagcttgccatgact
catccaagccatcacttaaactttggaatgaacccggatcatgctagaaattccttatcc
aactgtgggattcgacagccaaagtacggagatagaaaagttcaccatatgcacatgaga
aaaaaagggataaacaccctgataaatattatgtcccgtttgggacaggatgatccagct
ccttccaggattaaccacaacgagcgtttagaatttctgggagatgctgtggtggagttc
ttaacgagtgtccacttgtactacctgtttcccactctggaggaaggaggattagctacg
taccgcactgccatcgtacagaaccaacacctggccatgttggctaagaagctggaacta
gatcgatttatgctttatgctcatggtccggacctttgcagggaatcagatctccgccat
gccatggccaactgctttgaagctctaataggagccgtttatctagaggggagtctagaa
gaagcaaaacaattatttggacgtttactcttcaatgacaaggacctgcgggatgtatgg
cttaattatccactacacccactccaactgcaggagtccaatactgacaggcaactcatt
gagacctctccagttcttcaaaagcttacagagtttgaggaggcaattggagtcatcttt
acccacgttcggcttctagcacgtgcgttcactctgaggacagtaggctttaaccatctg
actctaggccacaaccagaggatggaattcctgggtgactccataatgcagttggtagcc
acagagtatttattcatacatttccctgatcatcatgaagggcacttaacgctgttgaga
agttctttggtgaacaacaggacacaggccaaggtggcagaagagctgggtatgcaagaa
tttgccatcactaatgacaagacaaaaagacctgtagctcttcggacaaagactttggct
gatctcttggaatcctttattgctgccctgtacattgataaagatttggaatacgttcac
actttcatgaacgtatgcttttttccacggttaaaggagtttattttaaatcaagattgg
aatgatcctaaatctcagcttcaacagtgctgcttgactctcaggacagaaggaaaagag
ccagacattcctctttacaagactttacagacagtgggaccatctcatgccaggacttac
acagtagctgtttacttcaaaggggaaagaataggatgcggtaaaggcccaagtattcag
caagcggaaatgggagctgcaatggacgcacttgaaaaatataactttccccagatggcc
catcagaaacgcttcattgaacggaagtacagacaagagttgaaagaaatgaggtgggaa
agagagcatcaagagaaagaaccagatgagactgaagaagcaaggaaataa
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integrated database retrieval system
