Chroicocephalus ridibundus (black-headed gull): 134512500
Help
Entry
134512500 CDS
T10910
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134512500 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crid04121
]
134512500 (TRIM54)
Ubiquitin system [BR:
crid04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
134512500 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
TRIM_CC
Sina_RING
CYP38_PsbQ-like
DUF5799
Prok-RING_4
Zn_ribbon_FGT1_2
RHH_9
CoiA_N
CagA
FlgN
Motif
Other DBs
NCBI-GeneID:
134512500
NCBI-ProteinID:
XP_063183971
LinkDB
All DBs
Position
3:complement(129433626..129437152)
Genome browser
AA seq
413 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKVGALEGGTV
GPAGGSGVARPAGPHAPSCPPPAQSELSDGIAMLVAGNDRIQAIITQMEEICHTIEENGR
RQKQHLGLRFDSLYGILEERKKELLQSIAREQEEKVQRVRGLIRQYGDHLEASSKLVESA
IQAMEEPQMAVYLQHSKELLKKITDMSKVSMSSRPEPGYENMDHFSINVDYVAEMLRTIE
FQTEPLGEEEADGPGDGSEAAADEDRLDSLEGPEAVEDVGPRQKPASSPHGQH
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcggccggttccggtgcccgtcg
tgccgccacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtcggccaggcccctgcacgccaaggcc
gagcagcacctcatgtgcgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctctgcaaggtcttcggggcgcacaaggactgcgaggtg
gccccgctgcccgccgtctaccagcgacagaaggtgggcgccctggagggggggacggtg
gggccagcagggggctcgggggttgcccgtccagccggccctcatgccccgtcctgtcca
ccccccgcccagagcgagctcagcgatggcatcgccatgctggtggcggggaatgaccgc
atccaggccatcatcacccagatggaggagatctgccacaccatcgaggagaacggccgg
cggcagaagcagcacctggggctgcgcttcgactcgctgtacggcatcctggaggagcgg
aagaaggagctgctgcagagcatcgcgcgggagcaggaggagaaggtgcagcgcgtgcgg
ggcctcatccgccagtacggcgaccacctggaggcctcctccaagctggtggagtcggcc
atccaggccatggaggagccgcagatggccgtgtacctgcagcactccaaggagctcctg
aaaaagatcacggacatgtccaaggtgtcgatgagcagccgcccggagcccggctacgag
aacatggaccacttctccatcaacgtggactatgtggcagagatgctgaggaccatcgag
ttccagacagagcccctgggcgaggaggaggcagacggacccggcgatggcagcgaagcc
gcagcagacgaggaccggctggacagcctggaggggcccgaagctgtggaggatgtgggg
ccgaggcagaaaccggcgagttctccccatggtcagcactga
DBGET
integrated database retrieval system
