Chroicocephalus ridibundus (black-headed gull): 134512529
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Entry
134512529 CDS
T10910
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03008
Ribosome biogenesis in eukaryotes
crid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134512529 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
134512529 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crid03021
]
134512529 (XRN2)
03019 Messenger RNA biogenesis [BR:
crid03019
]
134512529 (XRN2)
03009 Ribosome biogenesis [BR:
crid03009
]
134512529 (XRN2)
03016 Transfer RNA biogenesis [BR:
crid03016
]
134512529 (XRN2)
Transcription machinery [BR:
crid03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134512529 (XRN2)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
134512529 (XRN2)
Ribosome biogenesis [BR:
crid03009
]
Eukaryotic type
Pre-60S particles
RNases
134512529 (XRN2)
Transfer RNA biogenesis [BR:
crid03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
134512529 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF8363
Motif
Other DBs
NCBI-GeneID:
134512529
NCBI-ProteinID:
XP_063184014
LinkDB
All DBs
Position
3:complement(10654880..10705554)
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCSLCNQMGHEVKDCQGLPREKQGKHDQFADSLPVAEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRMKRDQPSFIPGGQFSPQALGNRSSPQAISNPRQAAFEMRMHDRQNSTTSSSPNTSL
NSDGSPSLAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQG
KLTLNENAVLPDQTVESPVPMLRDLTQNSAVSISFKDPQFDEDFVFKAVVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRERGMPGMYANAVPLG
TYGSPYTRPLMSGQQQIPKLLSNLRPQESWRGPTPLFQQTPQRNAGAAPLLAWNRMLQSQ
NQFQPNQYQGLGGPMNYPQRPEDRMDRGRQAYGPGRPYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttctttcgctggctcagccgcaagtacccctccatcatcgtcaac
tgcgtggaggagaaggctaaagagtgcaatggcgtcaaggctccaatcgatacaagcaaa
ccgaaccctaatgaggtggagtttgataacctgtatttggatatgaatggtataattcac
ccttgtacacatccagaagacaagccagcacccaaaaatgaagatgaaatgatggttgcg
attttcgagtatattgacaggatcttcaacattgtaagaccaaggcgacttctttacatg
gctatagatggagtagctccacgtgcaaaaatgaatcaacagcggtcgagaagattcaga
gcatcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctg
gcaaaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaactgtatt
accccgggaactgagtttatggacaatcttgctaaatgtctccgctattacattgctgac
cgtttgaacagtgacccagggtggaaaaatttgacggttattttgtctgatgccagtgct
cctggtgaaggtgaacataaaatcatggattacattagaagacaaagagctcaaccaaac
catgacccaaacactcatcattgtctgtgtggggctgacgctgatctgattatgcttggc
ttagctacacatgaaccaaacttcaccataattagggaagagtttaaaccaaataaaccc
aagccgtgtagtctttgtaaccagatgggtcatgaggttaaggattgccaaggtttgccc
agagaaaaacaaggcaagcatgatcagtttgcagacagccttcctgtcgccgaacaagaa
tttatcttcatccgcttatgtgttttgcgagagtatttggaaagagaactcaccatggcc
agtttgcccttcacctttgattttgaaagaagtgtggatgactgggtctttatgtgcttc
tttgtgggaaatgactttcttcctcatctgccatctttggagatcagggagggagccatt
gatcgcttggttaacatatataaaaatgtggtgcacaaaactggggggtaccttacagaa
agtggttttgtcaacctacagcgagtccagatgatcatgttagctgttggagaagttgaa
gatagtattttcaaaaagagaaaagatgacgatgataactttaaaagacggcaaaaagaa
aaaagaaaaagaatgaagagggatcagccgtcttttattcctggtggacagttttcccct
caagctctgggaaatcgttctagccctcaggcaatcagtaaccctaggcaggctgccttc
gagatgagaatgcatgacagacagaattctacaacttcatcatctccaaataccagcctc
aattctgatggcagcccatccctggcaggaggaattaagcgaaaagctgaagatagtgac
agtgaacctgagccagaggataatatcaggttatgggaaactggttggaaacagcgctac
tataaaaacaaatttgatgttgatgcatctgatgagaaattccgtcgtaaagttgtacag
tcctatgtggaagggctttgctgggttctcagatactactatcagggttgtgcatcctgg
aactggtattacccttttcactacgctccatttgcttctgactttgagggtattgcagac
atgccttcggattttgagaaaggctcaaaaccgtttaagcctcttgaacaacttatggga
gtatttccagcagcaagtggaaattttctgccaccaacgtggaggaagcttatgacagat
ccggaatcgagcataattgacttctatcctgaagattttgctatcgatttaaatgggaag
aaatatgcttggcaaggtgttgcgttgttgccatttgttgatgaacgacgccttagagct
gccctggaagaagtctaccctgaccttactcctgaagaaagcagaagaaatagccttggt
ggtgatgttctctttgttggaaaacaccatccgctttgtgactttattgtagagcagtac
aagaccaaaaatacagagccagttgatataccgccagagctgtgccatggaatccaggga
aagcttacgctgaatgaaaatgctgttcttccggatcagacagtggagtctcctgttcca
atgctgcgtgatcttacacaaaattctgcggtcagtatctctttcaaagacccacaattt
gatgaagactttgttttcaaggctgtagtgttacctggtgcaaagaaacccgctccagtt
ctgaagccgggagactgggaaaaaaccaacaatgatggcaggccttggagaccgcagctt
ggttttaaccgagacagaaaaccagtccatttggaccagtcagcgtttagaactttaggc
catacaatgccaagggaaagagggatgccgggaatgtatgccaatgcagtacctcttgga
acttacgggagcccatacaccaggccgcttatgagtgggcagcagcagattcctaaattg
ttgtcaaatcttagaccccaggagtcttggcgaggtcctacgcccttgtttcaacagaca
ccacagagaaatgctggggctgctcctcttcttgcctggaaccgcatgctgcaatcccaa
aatcagttccagcccaatcagtatcaggggctgggtggaccaatgaattacccacagaga
cctgaagatcggatggacaggggaagacaggcatatggccccgggaggccctacccgcta
ccacctccctcaggaagatacagctggaattag
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