Chroicocephalus ridibundus (black-headed gull): 134512611
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Entry
134512611 CDS
T10910
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134512611 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crid03400
]
134512611 (MSH6)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134512611 (MSH6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Autoind_bind
Motif
Other DBs
NCBI-GeneID:
134512611
NCBI-ProteinID:
XP_063184186
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Position
3:complement(15462761..15481103)
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AA seq
1364 aa
AA seq
DB search
MSRQSTLLRFFPKATSASPRPPAPAPAPAPAPPQAGAGTRRRHSSGEQNGRQAATSPAGA
AGRAAARRKEAGEKGLGNGAAAKTPSVSCEYSAGDLVWAKMEGYPWWPCLIYNHPTEKTI
VRGKGKSSRVHVQFFDDSPTRGWVSIKYLKPYKGSSDEETLKGGMFYSTKPEIKRAMVLA
DDAMSKDKTKRLELAVCSEPSDTEEEEEEEEVEQMSESASGNSDDCNSEEDVKSNKRVAN
RESAIKAKRRRVLDSDSDHDGSDVEFKPDVKEVASSEEASSGVDENESTDTETDAESVAE
SPIKVPSKRKRREINKPAKRSSLENERSETPKRAATVSLEAKSKLTSFAAPESFESQANA
CSGGISGFAVWEHEKLDWLQEGKKKDAHRKRQGDPDYDPCTLYVPEDYLNKCTPGMRRWW
QLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLV
QKGYKVARVEQTETPEMMETRYKAMAHPTKFDKVVRREICRIITKGTQTYSVLDCDPSEN
HNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLY
EKGNLSVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVLLEEGYFKEKQDSENGCSLP
SVVKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDVDI
AKTMSSSSFFARTDQRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQ
WLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPDLERLLSKIHSIGSPLKSQN
HPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVMEEIASDFKSKVLKQLVTRKAK
NPDGRFPDLNAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKAVEEDLHNYLD
KQRKLLGFKSVLYWGAGKNRYQMEIPESAISRNLPEEYELKSTRKGYKRYWTKEIEKMLA
AMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLDVLMSLANYSQDGDGPLCR
PVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIGSKDEDSSSEASCVLVTGPN
MGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE
TSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAERIKCRTLFSTHYHSLVEDY
SHNAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKG
HRKAKEFEEVTVSLRVFRYLCLVVDGATSDANAVQKLTAMINHL
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccagagcaccctgctccgcttcttccccaaggccacatcggcgtcgccgcgc
ccgcccgcaccggctccggctccggcgcccgccccaccgcaggccggtgcggggacccgc
cgccgccactcctcgggggagcagaatggccgccaggccgccaccagccccgccggcgcg
gcgggcagagctgcggcccggcgcaaggaggcgggggagaagggcttggggaacggggcg
gccgccaagacccccagtgtctcctgcgagtattcagctggtgacttggtctgggctaag
atggaaggttatccttggtggccgtgtctcatatacaaccatcccactgaaaaaacaata
gtcagaggaaaagggaaatccagtcgtgtccatgtacagttttttgatgacagccctaca
aggggctgggttagtataaaatatctgaagccatataaaggctcatctgatgaggagact
ctgaagggaggtatgttttatagcacaaagcctgaaattaaaagagcaatggtgctagca
gacgatgcaatgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaacct
tcagacacagaggaggaggaagaggaggaggaagtggagcagatgagtgaaagtgcatca
ggcaacagtgatgactgcaatagtgaggaggatgtgaagagcaacaagcgagtagcgaac
agggaaagtgccataaaagccaaaagaagaagagtgttggattctgacagtgatcatgat
ggctctgatgtagagttcaagcctgatgtgaaagaagtggcaagcagcgaggaagcaagt
agtggggtggatgaaaatgaatctactgacacagagacggatgcagagagtgttgcagaa
agtcccataaaagtcccttctaagcgaaagagaagagagataaacaagcctgctaaaagg
agtagcttagaaaatgaacgttctgaaactcccaaaagagcagcaacggtttctttagaa
gccaagtctaagctgacatcatttgcagcacctgaaagttttgagtctcaagcaaatgct
tgcagtggaggcatcagcggcttcgcagtatgggaacatgaaaagcttgattggctgcag
gaagggaagaagaaagatgcacacaggaaacggcagggtgaccctgattatgacccatgt
actctgtatgtacctgaggactatcttaacaagtgcacgccaggaatgcggaggtggtgg
cagctgaaaagtcagaactttgatgctgtgattttctacaaagttggaaaattctatgag
ttgtatcatatggatgctgtcactggcgtaaatgagttgggcctgatctttatgaagggt
acttgggcccattcaggttttccagaaactgcgtttggtagattctctgatgttctggtg
cagaagggctacaaggtagcccgtgttgagcaaacagaaacacctgaaatgatggaaacg
cgctacaaggcaatggcccacccaacaaaatttgacaaggttgtacgcagagaaatctgc
agaatcatcaccaagggaacgcagacttacagcgttctggactgtgatccctctgagaac
cataacaaataccttctgtgcgttaaggaaaaagaagactcctctggacaacgtgtttat
ggggtctgctttgttgacacatcggtggggaagttttatgtaggccagttctcagatgac
cgtcactgttcaaggtttaggactttagtagcccattacactcctgtgcaggtactgtat
gagaaggggaacctgtctgtggacacacagaagatactgaagggctcacttatatcttgc
attcaggaagggctgatctctggttcccagttctggagtgcatctaaaacactaaaagtc
cttcttgaagaaggatatttcaaggagaaacaagactctgaaaatggatgctctctgccc
tctgtagtcaaatctctgacttcagagagtgattcgctgggattaactccaggtgaaaac
agtgaattagctttgtcagctcttggggggtgtgtcttctatctcaaaaaatgtctgatt
gatcaggagctgttatcgctggcaaactttgaggagtatgtccctgtggatgtcgatatt
gcaaaaactatgagttcaagtagtttctttgccagaactgaccagcggatggtgctggat
ggagtcaccctgatgaacttggaagtcctgcagaacggaaccaacggaaccacagaaggt
actttgttggaaaggattgattcttgctgtacgccgtttgggaagcgactcctgaaacag
tggctctgcgctccgctttgtaatcctaaatccattaatgatcgtttagatgctgttgag
gaccttctggcagtgccagataaaatgtcagaagttagtgagcacctgaagaaacttccg
gatcttgaaaggctgctcagcaaaattcacagtattggatcgccacttaaaagtcagaac
catcctgacagcagggccatcttttatgaagaaatcaaatacagcaaaaaaaaaattgct
gactttttgtctgcactggaagggtttaaagtaatgaatgaaattgtcgatgtcatggaa
gaaattgccagtgacttcaaatctaaagtccttaagcagctagtcactcgcaaagccaaa
aatccagatggccgctttccagacttgaatgcagagcttaaaagatgggatactgctttt
gatcacaaccaggctcgaaagacgggagtgattactccgaaggcgggttttgaccccgat
tatgataaagcactacaggatattaaagctgtcgaggaagatcttcacaactacctggat
aagcaacgcaaactgcttggattcaaatccgtgctgtactggggggcaggcaaaaaccgg
tatcaaatggaaataccggaaagtgcaatatcacgtaatttgcctgaggagtatgagctg
aagtcaaccaggaagggatataaacgttactggaccaaggagatcgagaagatgctggct
gcaatggttaacgccgaagagcgcagagatgcagcactaaaagactgtatgaggcgtttg
ttttacaacttcgataaaaatagcaaggactggcagacagcggtggaatgcattgctgtg
ttagatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccga
cctgtaattctactgcctgtggatagtgctcctcccttcctggaacttaaaaattcacgc
catccatgcattacaaaaacattctttggggatgattttattcctaatgacatcgtgata
ggcagcaaagatgaagatagcagtagcgaagcttcctgtgtgttagtaactggcccaaat
atgggcggcaaatctacgctcatgagacaggctggtctcctggttataatggctcaactg
ggatgctacgtacctgctgaagtctgcaggcttacaccgattgacagagtatttacaagg
cttggggcctcagacagaattatgtcaggtgaaagtaccttctttgttgaattgagtgag
acttccagcattcttcagcacgcaacagagcactcccttgttcttgtggatgaactgggc
agaggcacagctacttttgacggaacagctatagcgagcgccgtggtgaaagagcttgca
gagagaatcaagtgccggactctgttctccacacactaccattccctggtcgaggattat
tcgcacaacgcggccgtgcggcttggccacatggcgtgcatggttgaaaacgagagcgaa
gatccgagccaggaaacaattaccttcctgtataagttcattgaaggagcgtgtccaaag
agctacggcttcaatgcagcgagacttgctgatattccagaggaagttattcagaagggg
cacagaaaagcaaaagagttcgaagaagtgactgtttcactgagagtatttaggtacctg
tgtctggtggtggacggcgcaacaagcgacgcgaacgctgttcagaaacttaccgctatg
atcaatcatctttaa
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