Chroicocephalus ridibundus (black-headed gull): 134512617
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Entry
134512617 CDS
T10910
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134512617 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crid03400
]
134512617 (MSH2)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134512617 (MSH2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
134512617
NCBI-ProteinID:
XP_063184194
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Position
3:complement(15645155..15699921)
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AA seq
936 aa
AA seq
DB search
MAAEPPREVVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSTADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQMNSAALPEMEKQVAVSSLSAIVKFLELLSDDSNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIE
ERLNLVEAFVGDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPN
LTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHHFRITCKEEKVLRNNS
KYGIVDTQKNGVKFTNSKLSSVNDEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAF
CMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKFYREREEGEKIIQDFLCQVKALPLTD
MSEDDIKIKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagccgccgcgggaggtggtgtggccggagggcgctggggctgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgattactacacggcgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggaactcagaagcttgagagt
gttgtgcttagtaaaatgaattttgaatcttttgtgagagatctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagtaaatcggtcaaagagaatgactgg
tatttagcatacaagggttctccaggaaatcttgcccagtttgaggaagttctcttcgcc
aacaatgacatgtcaacggccattggggttgtgggggttaagctgtctactgctgatgga
caaagagtggtaggagtgggctatgtcgacacaaccctgagaaaactgagcgtctgtgag
tttccagataatgatcaattctcaaaccttgaagctctactggttcagctaggaccgaag
gagtgtgtgctaccaggaggagagactgcaggagagatgggaaaactacgacaagtcatt
cagaggggaggaatcctgattacagacagaaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaatcgcctgttaaaatcaaaaaaagaagaacaaatgaacagcgcagcg
ttgccagagatggaaaagcaggttgctgtttcgtccttgtcggccattgtcaagttttta
gagttgttgtcagatgattctaactttggacagtttgaactgactacttttgatcttagt
caatatatggttctagataacgcagctgttcaagccctcaacctttttcagagttctgtg
gaaaatgctaatactgcacagtctctagctggtttactaaacaaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagaatagaattgaa
gaaaggctgaatttggttgaagcttttgtgggggatccagaactacgtcagtgccttcaa
gaagatctcttgcgtcgattcccagatcttaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaggactgttaccgaatgtatcaggctattaatcaactgcctaatgtt
gtacaagcactagaaaaacatgaaggagctcaccagatgttgttgttggcagtgtttata
acacctcttaatgatatctactctgacttctcaaagtttctggagatgatagaaacaaca
ttggacatggataaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaat
ttgacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtcctttttaaag
agtgcagccaaagaactaggcttggaagctggcaaaagtataaaactggagacaaattca
cagtttggacatcactttcgaataacctgcaaggaggaaaaagttcttcgtaataattca
aaatatggaatagttgatacacagaagaatggtgtgaaatttacaaacagcaaactgagc
tccgtcaatgatgaatatataaagaacagagaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagaaccaatacagacgatgaatgat
gtaatagctcaattagatgcaattgtaagttttgctcatgtgtcaaacggagcaccagtg
ccgtatgtccgtcctgtcattctggaaaagggacaaggaaggatcgtgctgaaaggtgcc
aggcatccctgcatcgaagtgcaagacgaggtggccttcatccccaacgacattacattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaacg
tacatccggcagacaggggtgattgttcttatggcccaaattgggtgttttgtaccatgc
gactctgcagaaataaccattgtggattgtatcctggctcgggtgggagctggagacagt
cagctgaaaggcgtgtctactttcatggcggaaatgttagaaactgcttcaatccttagg
acagcatctgaaaactccctgataatcattgatgagctgggaagaggaacttctacctac
gatggctttggcttagcatgggctatttcagaatacattgctagcaaaatctgtgctttc
tgtatgtttgctacacattttcatgaactgacagctcttgctgaccaagtgccaacagta
aataacctacatgttactgctctgaccagtgatgacacactgacgatgctttatcgtgtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagcagagctggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccagccaagaaattttacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagacgacatcaaaatcaagctgaaacagctgagaaacgatgtgttggcaaag
aacaacagttttgtgaatgaaatcatttcccgaacgaaagttacatcgtga
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