Chroicocephalus ridibundus (black-headed gull): 134512989
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Entry
134512989 CDS
T10910
Symbol
DCHS1
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
crid04515
]
134512989 (DCHS1)
Cell adhesion molecules [BR:
crid04515
]
Cadherins
Cadherin related
134512989 (DCHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Cadherin_4
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
134512989
NCBI-ProteinID:
XP_063185017
LinkDB
All DBs
Position
1:complement(12345287..12424216)
Genome browser
AA seq
3266 aa
AA seq
DB search
MEQMKGSAVLLLELLILGGLRAGKGSAVLGTLDLQIDEEQPAGTIIGDISAGLPPGTSAY
MYFISAQEGSGVTTDLGIDENTGIIKTARVLDRETRDRYSFIAVTPEGITVEVNIQVNDI
NDHAPAFPKQHSTLQIPEHTPIGSRFPLDPAFDADSGLLNTQGYVIKGENVGQAFRLETR
RGPNGVLYLDLVVSNVLDRENRSSYSLLLEAYDGGSPPRSTQMTLDVSIQDINDNAPSFN
QSRYHTLISENLKPGSSILQVFASDADEGDNGDVIYEINRRQSDPDQYFTIDSRTGVIKL
NKGLDYEVRKVHELVVQARDKAVHPEVTTAFVTIHVRDYNDNQPTMTIIFLSEDGSPQIS
EGAQPGQYVARISVSDPDYGEYSNVNVTLEGGDGKFALTTKDNIIYLICVDQLLDREERD
SYDLRVTATDSGTPPLRAESAFVLQVVDINDNPPLFDQQEYKQSIPEVVYPGSFVLQVTA
RDKDQGPNGEVRYSIVHGRDTHSSWFAIDPATGIITTAAPLDYEKDPQPQLTVLATDRGT
PALSSSAVVHVSLQDVNDNEPVFRSNFYNVSLKENTPVGTCFLQVTATDADSGTFGSLSY
SIGSGIGSVVPTQFSIDKHSGQLCTVQPLDRDEGTSAYDFTITAVDGGGLNSMVYVKVFL
EDINDNRPVFYPLEYAASISTQSMPGTAVLRVTAHDKDEGLNGRVTYRIVLGNSPPLFSL
NKDTGVISLSWSLSGKANTLVQLVISAQDGGGLQAQPNARVNISVVEGTVSPPVFEQAQY
FFTVPEDVLQGASVGAVRAQNPPGHADDIFYSISSGDPHGYFSIDSASGQLRTSLPLDHE
SQAVLILDVQARSGSPPAYSNTRVKISVSDVNDNVPVFPAPSDSILLPEATEPGTTVYTL
QAEDRDSGANGQVNFELASGGDGTFSVDRSSGAVRLIGALQYEASAAYRLAIVARDSGVP
QLSSTFTLLVHVQAEHDNGPIFDTLTYRVEVQEGVPVSTRFLQVRALARDAESVTLTYHL
RADGDAASFGIMPESGWLYVKSALDRETRDLYVLTVLASAGGSGAGGEARKTGTSTVRIS
ITDENDNSPRLSEERYFFTVPENQAPGSSVGRVMASDRDAGQNSRLTYRLLQHDPNFLIH
AQTGELSTKHSLDREQQSSYQLLVIVQDGGAPPRSATGTIYVTVLDENDNAPAFLHVASG
QELPVQVLEEKPSGLLVASLQAKDPDEGENGTIIYSLIGAWAERFTLHMATGELRTATVL
RRSDRAEYIFTVTASDRGTVPRSTSAIIRIQVLPSSRVLPRPDATVLTLHPLEGVKPGSV
IGSVAPPDAPARGQLTYTVVGGGGDGTFVVDSVTGEIYAARELDYEAGARHVLQVSAEDT
QHGYPSSRLVLVHIHVQDCNDQAPTFPEDPITIVVPENAQAGSSVFTFQALDGDGVGPNS
QVRYALLHQEPPEAPFQLDSRSGLLTLRHGLDREAAASFLLVVEATDQARNVSQRRSAAV
TARVFVTDENDNVPVFLSPAAVSVMEDQPTGFVALHVVAQDNDLGENGRVSYSLRAGNSD
GRFHLNPSTGALSIVRALNREEVVQHNLTVVAMDHGFPRRSATQLLSVLVLDVNDEAPAF
EKPEYEAHIMENLPAGSPVLQVLATDRDLGANGQVSYGTLSGGPFSIHPQTGLIVTTRAL
DREEQEQHVLMVYARDGGLPPNLSKATVRITVGDENDHAPHLESESCSVEVPENQSRVAL
YTLRATDPDGGENGRLEYRVADGDPGQDFSLDPVSGVLSTARALDREQVASYSLTVVVQD
HGTPPRSATMAVNVRVLDLNDNAPGFAQASYVVEVPEDLPVGALVLQLVAEDPDEGTNGQ
VSYYLGNESLGMFQVEPQSGHIRSAQALDRERHPSYSFLAKAVDSAPWEPKSAAVRVTVT
VRDVNDHAPAFLHSPLTVNLSRHTPLKQVVATMRAEDRDAGANASILYRLATPNSAFAIN
SYTGDIQLLQPLSSLSQRQRTLFILATDLGQPALSSTGVVVIHLQEEPYQGLRFPRSTSD
VAIPENAAPGTAVANIQATHTGGSSGRITYSIVSGNEKNAFLIQPSSGAISVQDSSSLDF
EASPRLRLVVQAETAASFGFMAINLNLQDVNDNLPRFQLQNYVAFIWESQSYDSPVIQVL
ADDLDQGANGQVTYAINQSLPMTGLYHIDPQTGTITTAAILDREIWSQTRLVVTAMDRGT
PPLVGSATLTVVVMDVNDNSPTIPFPWEVRVPENTLLGTQIAQLTGNDVDSGPVLSYALM
LDGDAVGTFSVLRYGGRIALTGPLDYEQRSHYTLTLRASDTRHETEANLTVVVEDVNDNA
PTFSQGFYQVTLPEHTPAGSIILTVSATDPDSGSNGDVTFHLAVPSPDIAIDPSNGTLFT
IRRVEFDANQPTLDLVVEARDRGSPSLSSWATVQLQVLDVNDHSPSFHAPRYNASVPEDL
RPGTTVLTLEAGDADLSRENAGFDYTIVSGNGGNAFQVESRVAWAGGHLRTQGALVLVEH
LDFEAIPVYNLTVAASDRGLPQRSATVPVLITVQDVNDNPPVFTRAEYRTAVSESAPPGT
ELLRVVAHDADSGPRGHVHYTISSGDQHGLFQLHENTGALCLARPLDREAQALHALVVQA
TDVPGGHFALVPVAIEVKDVNDNKPYFPVEVLSASMRENLPPGTLVTTLRAIDADTGVFG
ELRYTVLEQPVGEPGMAEGRDAFAVNSSSGELRSRLTFDYERAKAFQLLVRATDAGNASA
TVTVRVLVTGEDEYNPIFLSPSFNFEVPEGARKGQSIGRVLATDEDEGADGVVLYSLAKP
SPYFAINQTTGTIYLRVDSQPQAGAGRAKREPREMSLEVQARSPLPASRSASAQVIIDVT
HTSFGLAPDLNLLLVAVAASLGVVVVLAAVAIVLALVRSRHRRGRKKPEGDGALGRVPSG
SLQKLGREEPALPGGEHIYHQALPGYGGEPAGPYTRGGSLDPSHSSGRGSAEAAEDDEIR
MINEYPRVASITASMQEHISARGPDSGIQQDADQLSDISCEPAALESAQWFKSKKGSGLL
LPGPPPQLYREDGGGSAFLGVRCGLSVSSQPQDYAFPEDGKPSVEGSLTAIVASDEELRG
SYNWDYLLNWCPQFQPLASVFTEIARLKDESSLRKPFPTKPKAEPKPRIDPPPLITSVAH
PGAKSVPPKPPPGRTFPHPSSLRRSPISHEGSISSSAMSPSFSPSLSPLAARSPVVSPFG
ISQGPSASAISAEHSLEPPEEAELRI
NT seq
9801 nt
NT seq
+upstream
nt +downstream
nt
atggagcagatgaaggggtcggccgtgcttctgctggagctgctaattcttgggggcctg
agagcagggaagggctctgctgtcctgggcaccctggacctacaaatagatgaggagcag
ccagctggcaccatcatcggggacatcagtgctggcctcccccctggaactagtgcctac
atgtatttcatctcagcacaggagggcagcggtgttaccaccgacttggggatagatgag
aacaccggtatcatcaaaacagctcgtgtcctggaccgagagactcgggaccgctacagc
ttcattgctgtaaccccggaaggcatcacggtagaagtgaacatccaagtgaatgacatc
aatgaccatgctccagcctttcccaaacaacacagcaccttacagatcccagagcacaca
cccatcggcagcagatttcccttggacccagcctttgatgctgacagtggcctgctaaat
actcaaggctatgtgattaagggggagaatgtggggcaggccttccgcctggaaacacgt
cggggacccaatggggtcctgtatttggacctggtggtcagcaacgtcttggatcgggag
aaccgttcatcatactcactgctgttggaagcctatgatggtggctctcctccccggagt
acccagatgacactggatgtgtccatccaggacatcaatgacaacgctcctagtttcaac
cagagccgctatcacactctcatctcagagaatttgaaacctggcagcagcatcctgcag
gtctttgcctctgacgcagatgaaggtgacaatggggatgtgatttatgagatcaaccgg
cggcagagcgatcctgaccagtacttcaccatcgactcccggactggagtcatcaagctc
aacaagggtctggactatgaagtaaggaaggtgcatgagctggtggtgcaggcaagggat
aaggctgtccatcctgaggtcaccacagcctttgtcactattcacgtgcgtgactacaat
gacaaccagcccaccatgactatcatcttcctgagtgaagatggctcccctcagatctct
gagggagctcagcccggccagtatgtggcacgcatctctgtttccgacccagactatggc
gagtactccaatgtcaatgtcacactggagggaggagatggcaagtttgccctcactacc
aaggacaacatcatctacctgatctgtgtggaccagcttctggatagggaagaaagagac
tcctacgatttgcgagtgacagctactgactcaggaacacccccactccgggcagaatca
gcctttgtgctgcaagtggtggatatcaatgacaaccctccactcttcgaccagcaggag
tacaaacagagcatccctgaggtggtgtacccaggcagctttgtcctgcaggtgacagct
cgtgataaggaccagggtcccaatggggaggtgcggtacagtatcgtgcatggccgtgac
acccactccagctggtttgccattgaccctgccacaggtatcatcaccaccgccgccccc
ctggattacgagaaggaccctcagcctcagctgactgtgctggccacagacaggggcacc
cccgccctctcctcttcagctgtggtacatgtgtccctgcaggatgtcaatgacaatgag
ccagtgttcaggagtaatttctacaatgtttccctgaaggagaacacccctgttgggacc
tgcttcttacaggtgacagccacagatgcagacagtggcacatttggctccctttcctac
tccattggttctggcatcggcagtgttgtccccacgcagttcagcatcgacaagcactcg
gggcagctgtgcaccgtgcagcctctggaccgtgatgagggcacgtccgcctatgatttc
accatcactgctgttgacgggggtggcctgaactccatggtgtatgtgaaggtttttctg
gaggacataaatgacaaccggccagtgttttacccgctggagtatgctgccagcatcagc
acacagagcatgccaggtacagctgtgctgcgtgttactgcccacgacaaggacgagggg
ctgaacgggagagtgacctaccgcattgtcctgggaaactcaccccctctcttctccctc
aacaaggacacaggtgtcatctccctctcatggtccctgagtggtaaagccaacaccctg
gtgcagctggtgatctctgcacaagacggtgggggcctacaggcacagccaaatgcccgg
gtgaacatcagcgtcgtggagggcacagtctccccccctgtcttcgagcaagctcagtac
ttcttcacagtgcctgaggacgtgctgcagggtgccagcgtgggggctgtccgggcccag
aaccctccaggtcatgcggatgacatcttttattccatctcctcgggggatcctcatggc
tacttttctatcgactctgcctccgggcagctccgcaccagcctgcctctcgatcatgag
tcccaagcggttctcattctggatgtccaggcccgaagtggttcacctcctgcctacagc
aacacacgcgtgaaaatctctgtctcagatgtgaatgacaacgttccggtgttcccagcc
ccctccgactccattctgctgccagaggccacagaacctgggactacagtgtacactttg
caggccgaggaccgtgacagcggtgccaacggtcaggtgaattttgagctggcatcagga
ggtgatggcaccttcagtgtggaccgctcctcgggggcggtgcgactgatcggggccctg
cagtatgaagccagcgcagcctacaggttggccattgtggctcgagacagcggcgttccc
cagctcagctccacgttcacgttgctggtgcatgtgcaagccgagcacgacaatgggccc
atcttcgacacgctcacctaccgcgtggaggtgcaggaaggtgtccctgtctccacccgc
ttcctgcaggtgcgggccctggcacgcgatgcagaatctgtgacccttacctaccacttg
cgtgcagacggggacgctgccagctttggcatcatgcccgagagtggctggctgtatgtg
aagagcgcactggaccgggagacgcgggacctgtacgtgctcacagtgctggcctcggca
ggaggcagtggtgcagggggggaagcccggaagacaggcaccagcactgtacggatcagc
atcaccgatgagaatgacaacagcccccggctgagtgaggagcgttacttcttcactgtt
cccgagaaccaggctcctggtagcagtgtgggaagggtgatggcgagtgaccgggacgct
gggcagaacagccggctcacctaccgcctgctccagcatgatcccaacttcctcatccac
gcgcagacaggggagctcagcaccaagcatagcctggaccgggagcagcagtccagctac
cagctcttggtgatcgtgcaggatgggggagcaccaccccgcagtgccacaggaaccatc
tatgtgactgtgctggacgagaatgacaacgctccggctttcctccacgtggccagcggt
caggagctgcccgtgcaggtgctggaagagaagccatcgggacttctagtcgcctccctg
caagccaaggaccccgacgagggtgagaatgggaccatcatctactcgctgataggagcc
tgggcagagcgtttcacgctgcacatggctactggagagttgcggactgccacagttcta
cgccgctctgatcgtgccgaatacatcttcaccgtgacagccagtgaccggggcacggtg
cctcgcagtacctcagccatcattcgcattcaggtgctgccgtcctcccgggtgctgcca
cggcccgatgccactgtgctgaccctgcaccctctcgagggggtgaagccggggtctgtg
atcggctcggtggcacccccggatgcgcctgcgcgaggacagctgacctacacggtggta
ggaggtggtggggatggcacctttgtggttgacagtgtgacgggggagatttacgctgcc
cgggagttggactatgaagctggggcacggcacgtgcttcaggtgagtgccgaggacacg
cagcatggctacccctccagccgactggtgctggtacacatccacgtgcaggactgcaat
gaccaggcgcccaccttccctgaagaccccatcaccattgtggtgcccgagaatgcccag
gctggctcgtccgtcttcaccttccaggcgctggacggggatggtgtgggtcccaacagc
caggtgcgctacgccctgctgcaccaggagccccccgaggcccccttccagcttgacagc
cgctcggggctgctgaccctccgccacggcctcgaccgggaggctgctgcctccttcctc
ttggtggtggaggccacggaccaggcccgcaacgtcagccagcgccgctcggcagctgtc
acagcccgtgtgtttgtgactgatgagaatgacaacgtgcccgtgttcctctcacctgct
gccgtcagcgtcatggaggaccagccgacggggttcgtggcgctgcacgtggtggcccag
gacaacgatttgggagagaacgggcgtgtgagctactcgttgcgagcaggcaacagtgat
ggccgcttccaccttaaccccagcactggcgcgctctccatcgtgcgggccctcaaccgg
gaggaggtggtgcagcacaacctgaccgtggtggccatggatcacggtttcccgcgccgc
tccgccacgcagctactgtctgtgctggtgctggatgtcaacgatgaagctcccgctttt
gagaaacctgagtatgaagcacacatcatggagaacttaccagctggcagccctgtgctg
caggtgctggccacggaccgggacctgggtgccaatgggcaggtgtcctacgggactctc
tcgggggggccgttctccatccacccacagacggggcttattgtcaccacacgtgccctg
gaccgcgaggagcaggagcagcacgtgctgatggtctatgcgcgggatggtggcctgccc
cccaacctctccaaggcaactgtgcggataacagtaggggatgagaatgaccacgcgcca
cacctagagagtgagtcctgctctgtggaggtccccgagaaccagagccgcgtggcactc
tacaccctgcgggccaccgatcctgacggaggcgagaacgggcgcctggaataccgcgtg
gcagatggagaccctgggcaggatttcagcctagacccagtctccggtgtcctctccact
gcacgtgcccttgaccgggagcaagttgcttcctacagcctcacagtggtggtgcaagac
cacggcacccccccgcgcagcgccaccatggcagtgaacgtgcgggtgttggacctgaat
gacaacgcccctggttttgctcaagcctcgtatgtggtagaggtgccagaggacttgcct
gttggcgccctggtgctgcagctggtggctgaggaccctgatgaaggcaccaatgggcag
gtctcttactacctgggcaatgagtcacttggcatgttccaggtcgagccgcagagcggg
cacatcagaagtgcccaggcgctggaccgggaacgccaccccagttacagcttcctggcc
aaggctgtggattcagcaccgtgggagcccaagagcgcggctgtgcgcgtcactgtcacc
gtgcgagacgtcaatgaccatgcccctgctttcctgcacagcccactcactgtcaacttg
tcccgccacaccccgctcaagcaggtcgtggccaccatgagggcagaggacagggatgca
ggtgccaatgcctccatcctgtatcgcctcgccacccccaactccgcctttgcgatcaac
tcctacacaggggacatccagctgctgcagcccctgagctcgctcagccagcgccagcgg
acgctcttcatcctggccacagacctggggcagccggcgctctcctctaccggcgtggtg
gtgatccatttgcaggaagagccctaccaggggctgcgcttcccccggagcaccagtgat
gtggccataccagaaaatgctgccccaggcactgctgtggcaaacatccaagctacccac
acggggggctcttctgggcgcatcacctacagcatcgtcagcggcaacgagaagaatgcg
ttccttatccagcccagttcaggtgccatctcagttcaggactccagcagcctggacttc
gaggccagcccccggctgcgcctcgtggtccaggcagagacagcagcttccttcggcttt
atggccataaaccttaacctgcaagatgtgaacgacaacttgccacgcttccagctgcag
aactacgtggcgttcatctgggagtcacagagctatgactcaccagtcatccaggtcctg
gcagatgatctggaccagggagcgaatgggcaggtgacttacgccatcaaccagtccctg
ccaatgacaggcttgtaccacatcgatcctcagactggcaccatcactactgctgccatc
ctggacagggagatctggtcccagacgcgtttggtggtaacggcaatggacagggggact
ccgcctcttgtgggctctgccacgctgaccgttgtggtgatggacgtcaacgacaacagc
cccaccatcccgtttccctgggaggtgcgggtcccagagaacacgctgctgggcacccag
atagcccagctgaccgggaacgatgtggactcgggccccgtgctctcctacgcgctcatg
ttggatggtgatgccgtgggcacgttcagcgtgctgcggtatggaggacgcattgccctg
acggggccactggactatgagcagcgcagccactacaccctcaccctgcgtgcctccgac
acccgccatgagacggaggccaacctcaccgtcgttgtggaggacgtgaatgacaacgca
ccgactttcagccagggcttctaccaggtgacactgccggagcacacgcctgcgggcagc
atcattctcaccgtgagcgcaaccgacccggactcggggagcaacggggatgtcaccttc
cacttggccgtgcccagccctgacatcgccattgaccccagcaacgggaccctcttcacc
atccggcgggtggaatttgacgccaaccagcccaccctggacctggtggtggaggcccgc
gaccgtggctctcccagcctctcatcctgggccacagtgcagctccaggtgctggatgtg
aatgaccacagccccagcttccatgcgccacgctacaatgccagcgtccccgaggacctg
cgcccaggaaccaccgtgctgacgctagaggcaggcgatgccgacctctcccgggagaat
gctggcttcgactacaccatcgtcagtggcaatggtggcaacgccttccaggtggagagc
cgggtggcctgggcaggggggcatctccgcacacagggtgccttggtgctcgtggaacac
ttggattttgaggccatccccgtctacaacctcactgtggcggcctcggaccggggcctg
ccgcagcgcagcgccacggtgcctgtgctcatcaccgtgcaggatgtcaacgacaaccca
cccgtgttcacccgagccgagtaccgcaccgccgtgagcgagagcgcaccccccggcaca
gagctgctgcgcgtggtggcccacgatgctgactcggggccccgcggccacgttcattac
accatcagctcaggagaccagcatgggctcttccagcttcacgagaacacgggggccctg
tgcctggcacggcccctggaccgggaggcccaggcgctgcatgcgctcgtggtgcaggcc
acggatgtgccaggcgggcactttgcgctggtacctgtagccatcgaggtgaaggacgtc
aacgataacaagccgtacttcccagtggaggtgctgagcgccagcatgcgagagaacctg
cctcccggcacgctggtcaccacgctgcgtgccatcgacgcagacaccggtgtctttggg
gaactgcggtacacggtgctggagcagccagtgggggagcccggcatggcggagggccgg
gatgccttcgccgtcaacagcagctctggggagctgcgctcccgacttacctttgactac
gaacgagccaaagccttccagctactagtcagggccactgatgctggcaacgcctctgcc
acggtgacagtgcgggtgctggtgacaggggaggacgaatacaatcccatcttcctgagc
ccctccttcaactttgaggtccctgagggcgcccgcaaagggcagagcatcgggcgggtg
ctggcaacagatgaggacgaaggggctgacggcgtcgtactgtactccctggcaaagccc
tcgccgtattttgccatcaaccaaaccacaggcaccatctacctgcgtgtggacagccag
ccccaggccggggccgggcgtgccaagagggagccacgcgagatgagcctggaggtgcag
gcgcgcagccccctgcccgcctcccgctcggcctctgcgcaggtcatcattgacgtcacg
cacacctccttcggcctggcccccgacctcaatctgctgctggtggccgtggccgcctcg
ctgggggttgtggtggtgctggccgccgtggccattgtgctggccctggtccgctcccgt
caccggcggggccgcaagaagccggagggggacggggcgctgggccgcgtgccgagtggc
tccctgcagaagctcggccgcgaggagccggcgcttcccgggggcgagcacatttaccac
caggccctgccggggtacgggggcgagccggcagggccctacacgcggggcggctcgctg
gacccctcgcactccagcggccgaggctccgccgaagccgctgaggacgacgagatccgg
atgatcaacgagtacccacgcgtggccagcatcacggcctccatgcaggagcacatctcc
gctcgcggccctgactccggcatccagcaagacgccgaccagctctccgacatctcctgc
gagccggctgccctggagagcgcccagtggttcaagagcaagaagggctccgggctgctg
ctgccggggccgcccccgcagctgtaccgcgaggatggaggaggcagcgccttcctcggc
gtgcgctgtggcctcagcgtctcctcccagcctcaggactatgccttcccggaggatggc
aagccctccgtggagggctcgctcaccgccatcgtggccagcgatgaggagctccgcggc
agctacaactgggattacctgctgaactggtgcccccagttccagccgctggccagtgtc
ttcacggagattgcccgcctcaaggatgagagctccctgcgcaagcccttcccgaccaag
cccaaggcagagcccaagccccgcatcgaccccccgcccctcatcacctcagtggcccac
ccgggtgccaagtctgtgccccccaagccgccgccgggcaggaccttcccgcacccgtcc
tccctgcgccgctcgcccatcagccacgagggctccatctcgtcctctgccatgtcgccc
agcttctccccctcgctgtccccgctggctgcccgctcccccgtggtctcgccctttggc
atctcacaggggccttctgcctccgccatcagtgctgagcactcgctggagccccccgag
gaggccgagctcaggatttag
DBGET
integrated database retrieval system
