Chroicocephalus ridibundus (black-headed gull): 134513042
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Entry
134513042 CDS
T10910
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134513042 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crid03021
]
134513042 (TAF5L)
03036 Chromosome and associated proteins [BR:
crid03036
]
134513042 (TAF5L)
Transcription machinery [BR:
crid03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134513042 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
134513042 (TAF5L)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
134513042 (TAF5L)
STAGA complex
134513042 (TAF5L)
TFTC complex
134513042 (TAF5L)
SAGA complex
134513042 (TAF5L)
SLIK complex
134513042 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Ge1_WD40
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
134513042
NCBI-ProteinID:
XP_063185127
LinkDB
All DBs
Position
3:complement(48881520..48902841)
Genome browser
AA seq
598 aa
AA seq
DB search
MQALLKSQVMKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSE
SGCANVVSAAPCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNG
LKSTVDSFYSRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVIRLQEDS
YNYLLRYLQSDNNNALCKVLTLHIHLDVQPAKRTDYQLYAGGSSSRNESNGLEPSDVPAS
ILQNEAALDLLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGFDNSC
VKLWSLRSRKLKSEPHLVDVSRIRLACDILDEEEEEDDSAGTEMKILRGHCGPVYSTRFL
SDSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLW
SFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPV
LALAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMD
NSVRVWDIRNTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctcttctaaagtcacaggtcatgaaacgcgtacgcacagaacagattcagatg
gcagtgtcctgctacctcaagcgccgtcagtatgtggactcagaaggtcccctaaaacaa
gggctgaggctgtgtcagactgctgaagagatggcagctaatctcacagtccaatctgaa
tctggttgtgccaacgttgtgtctgcagctccctgcctggcagagccacagcaatatgaa
gtacaatttggacgattacgcaattttctcacagattcagattctcagcacagccatgaa
gtgatgcctcttctgtatcccctctttgtctacctccatctgaacatggtccagaatggc
ctaaaaagcacagtggacagtttttacagccgcttccatggcatgttcttgcagaatgcc
agccagaaggatatcattgagcagttgcagactaccatgactattcaagatatcctgtcc
aacttgaagctccgggcttttctggacaacaagtatgtcatccgccttcaagaggacagc
tacaactaccttcttcgctacctccaaagtgacaacaacaacgccctgtgcaaagtcctg
accttgcacattcacctggatgtgcagcctgccaagaggactgactaccagctctacgcc
ggtgggagctcctcgcgcaacgagagcaacggcctggaacccagtgacgtgccggcttcc
attctgcagaatgaggcggcgctggatttactgcaggacagcattaaacgtgtcaaggat
gggcccccctcgttaacgaccatctgtttctatgccttctataacacggagcagttgctg
aacactgcagagatttcaccaaatagcaagctgctcgctgctgggtttgataattcatgt
gtgaagctgtggagcctgcgttcccggaagttaaaatctgagccccacctcgttgatgtg
tcgcgcatccgcctggcttgtgacatcctggatgaggaggaggaagaggatgacagcgca
ggcacagaaatgaagatcctgagaggacattgtggacccgtgtatagcacgaggttcctt
tcagacagttcaggactcttatcttgttctgaggacatgtccatcagatactgggacctc
ggaagttttacaaacactgtgttgtaccaaggacatgcctatcctgtctgggatttggat
attagcccctgcagcctgtacttcgccagtggctcccacgatcgcaccgcaaggctctgg
tcatttgatcggacatacccactgcgaatatatgcaggccatttggcggacgtagactgt
gttaagttccaccccaattccaactacttagcgacgggctccacagacaaaactgtgcgc
ttgtggagcactcagcaaggcaactcagtgcgtcttttcactgggcaccgtggccccgtg
ctagcgcttgccttttctcccaatggtaagtacctggcatcagcaggtgaagaccagcgg
ctaaagctgtgggacttggcctcaggaactctttacaaagaactgagggggcacacggac
aacataaccagccttacttttagccccgacagtagtttaattgcttcggcgtcgatggac
aattcagtccgggtctgggacattcggaacacttactgcaatgcccctgcagatgggtct
tccagtgaactggttggtgtatataccggacaaatgaataatgtactgagcgtacagttt
atggcctgtaatcttcttctagtgactggaattgcacaagaaaatcaggaacattaa
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integrated database retrieval system
