Chroicocephalus ridibundus (black-headed gull): 134513074
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Entry
134513074 CDS
T10910
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04517
IgSF CAM signaling
crid04519
Cadherin signaling
crid04520
Adherens junction
crid04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
134513074 (AFDN)
04519 Cadherin signaling
134513074 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
134513074 (AFDN)
04530 Tight junction
134513074 (AFDN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RA
AFDN
DIL
PDZ
FHA
PDZ_6
RA_3
RA_2
PDZ_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
134513074
NCBI-ProteinID:
XP_063185199
LinkDB
All DBs
Position
3
Genome browser
AA seq
1928 aa
AA seq
DB search
MSGGGGGSREEERRKLADIINHWNANRLDLFEISDPTEDLEFHGVMRFYFQDKAAGNFAT
KCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDVDEKPLVVQLN
WNKDDREGRFVLKNENDTLPPKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKRREKEA
LRQASDKDDRLLHGDDIENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQE
FRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVIEALEKYGLEKENPKDYC
IARVMLPPGAQHSDDKGAKETILDDDECPLQIFREWPSDKGILVFQLKRRPPDYVPKKSK
KITDGKPLKGKERVDGSGYGSCLPPEKLPYLVELSPGRRNHFAYYNYHAYEDGSDSRDKP
KLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSIDAETYVEGQR
ISETTMLQSGMKVQFGSSHVFKFVDPTQDHIIPKRPVDASLMVKGPRHKTGAVQETTFDL
EGDVHSGTALPASKSTSRLDGDRTSSASSTAERGMVKPMIRIEQQQDYRRQENRSQDTHG
PELILPASIEFRESSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTCRYVLSSQYRPDITP
TERTHKVIAIVNKMVNMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLS
RITVDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENNPQRPKIDDVLHTLTGA
MSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTAPDSGLCSHYWGAIVRQQLGHIEAW
AEKQGLELAADCHLSRIVQATTLLTMDKYSHADVPNINSTCFKLNSLQLQALLQNYHCAP
DEPLIPTELIENVVTVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNVP
SGLQEFLDPLCQRGFCRLIPHPRSPGTWTIYFEGADYESHLSHENAELAQPLRKEPEIIT
VTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGL
SQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQRVFDRRGSGKPRPKSEGF
ELYNNSTQNGSPESPQLPWTEYSEPKKLPGDDRLMKNRADHRSSPNVANQPPSPGGKNAY
ASGTTTKITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTREYFTFPASKSQDRMGPPQSQW
PNYEEKPQVQAESNHSINSTMQRVARSQEELRDKVFQPERNRLEVVIRKDVEYIDRKSDS
DQWMNSSVDSSTSSQEHLNHSSKPVSPGSCLTKSGPGRWKTPATSQTTPVAISQPIRTDL
PPPPPPPPVHYAAEFDELQMDLPLPPPPPPNQIGAQASSQVAAAERKKREEHQRWYEKEK
ARLEEERERKRREQERKLGQMRSQPLIPAQPVVPPVSLQQVKSEKPSTLQRSQETVIREL
QPQQQPRTIERRDLQYITISKEELSSSDSLSPDPWKRDAKEKLEKQQQMHIVDMLSKEIQ
ELQNKPDRTAEENDRLRKLMLEWQFQKRLQESKQKDEDDDEEEDDDVDTMLIMQRLEAER
RARQTAVPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEERRQQEEERTRREAEEK
RRQEEEYYSRLEAERRRQHDEAERRLLEPDEPGLYRPPLPREYELPSPTPSSNAPPPPPQ
RNTSYLKTQVLSPDTIYTAKFVAYNDDDDEEEDSNLAGQDKYSSTRKSYGDFPPATPKPQ
QPSRQPRPVSDGLFLSNSFQSSPVNANSTAAKKSQPPPPPNKPGSIHASSSKGINSYTGS
GGAAVGAHEVYRDPRDKRSKSQDTDLPGAPENLTFRERQRLFSQGQDVSNKVKASRKLME
LENELNTK
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcggcggcagccgggaggaggagcggcgcaaactcgccgacatcatc
aaccactggaacgcgaaccggctggacctgttcgagatcagcgaccccacggaggatctg
gagtttcatggagtaatgagattctactttcaagataaagcagctggaaatttcgcaaca
aaatgtatccgtgtctctagtactgccacaactcaagatgtgatagaaactcttgcagag
aagtttcgaccagacatgcgaatgttatcatcccctaaatactcactttatgaggtgcat
gtcagcggagaagaaagaagattagatgtagatgagaagcctcttgttgtacaattaaac
tggaacaaagatgatcgagagggaagatttgttctcaaaaatgaaaatgatacacttcct
ccaaagaaggctcagagtaatggccctgaaaaacaagaaaaagagggagtaattcagaat
ttcaaacgaactctctcaaaaaaagaaaaaaaagaaaaaaagaggcgtgaaaaagaggca
ttgcgacaagcatcagataaagatgatagacttcttcatggggatgatattgagaattct
cgccttgcagctgaggtttacaaagatatgcctgagaccagcttcactcgcacaatatcc
aatcccgaggtggttatgaaacggcggcgacagcaaaaactagagaagagaatgcaggaa
tttcgtagttctgatggcagaccagactcaggtgggacactgagaatttatgcagacagt
ttaaaaccaaatataccgtacaagacaatcctgctgtccactacggatactgcagacttt
gcagttattgaagcactggaaaaatatggcctggagaaggaaaatcccaaggattattgt
attgctcgtgtcatgctgcctcctggtgctcagcactctgatgataaaggtgctaaagaa
actattcttgatgatgatgagtgtccactgcagatattcagggagtggcctagtgataaa
ggaatactagtctttcagttaaaaaggcggcctcctgattatgtcccaaagaaatccaag
aaaataactgatggaaagccattaaaggggaaggaaagagttgacgggtctggctatggc
tcttgccttcctcctgagaaactaccatacctggtagaactaagcccagggagaaggaat
cactttgcctactacaattatcacgcttacgaagatggttctgactccagagataagcca
aagctctatcgtctacaattaagtgtcactgaagttggaactgaaaaatttgatgacaat
tctattcagttatttggtccaggaattcagcctcatcattgtgacctcactaatatggat
ggagttgttactgtaaccccgagaagcattgatgccgaaacctatgtggaaggtcagcgt
atttcagaaaccactatgctgcaaagtggaatgaaggttcagtttgggtcatctcatgta
tttaagtttgtggatcccactcaggaccatattattcctaaaagacctgttgatgcaagt
cttatggtcaaaggtccaagacacaaaactggtgctgttcaggaaaccacatttgatctg
gagggagatgttcacagtggaacagcattaccagcaagcaagagcaccagcaggcttgat
ggtgacaggacatcatcagcatccagcacagctgaacgaggaatggtgaagccaatgatt
agaatagaacagcagcaagattaccgcagacaggaaaacagatctcaggatacccatgga
ccagaactgatactacctgccagtattgaattcagggaaagctctgaagatgccttctta
tctgccattataaattacacaaatagctcaacagttcattttaagctgtcacctacatat
gtgttgtatatgacatgtcggtatgtattgtcaagccagtacagacctgacatcactcct
actgagcgtactcacaaagtcattgcaatagtcaacaagatggtgaacatgatggaagga
gttatacaggaggtagaccaggttgatcagaaacagaagaatattgctggggcacttgcc
ttttggatggcaaacgcatctgaattactgaatttcataaagcaagaccgagatcttagc
cgaattactgtggatgcacaagatgttttggcacacttagttcaaatggcattcaagtac
ctggttcattgtctgcaatcagagcttaataactacatgccagcgttccttgatgatcca
gaggaaaataatcctcagaggcctaaaatagatgatgtgctgcatacgttgactggagct
atgtccctcttgcgacgatgtagagtgaatgctgctctgactatacagctcttctcccag
ctgtttcattttatcaacatgtggctttttaacagattagttacagcccccgattcaggg
ttatgttcacattactggggagctattgttcgtcaacagttgggccatattgaagcctgg
gcagaaaaacagggtttagaattggctgccgattgccacttgagcaggatagtgcaggca
accacattgcttaccatggacaaatattcccatgcagatgttccaaatattaacagtact
tgctttaagctgaattccctgcagctccaagctttgttgcagaattatcactgtgctcca
gatgaacctctcatcccaacagaattgatagagaatgtagtaacagttgcagaaaatacg
gctgatgaacttgctcgcagcgatggccgagaagtccaactggaagaggatcctgactta
cagctaccttttcttttaccagaagatggctattcctgcgatgttgtcagaaatgttcca
agtggtctacaagaatttttagatccactctgtcagagaggtttttgtaggctaatacct
catccacggtcgccaggcacatggacgatatactttgaaggtgcagactatgaaagtcac
ctgtcacatgagaatgctgagctagctcagcctttgaggaaagaacctgaaattatcact
gtgacactaaaaaaacaaaacggaatgggactgagcattgttgctgccaagggtgctggt
caagacaaacttggaatatacgtcaagtctgttgtgaaaggaggtgctgcagatgtggat
ggtcgtctggctgcaggggatcagttgctcagtgtggatggtcgaagtttggtgggcttg
tcccaggaaagggcagcagaacttatgactaggacaggttctgtagtaacgctagaagta
gcaaaacaaggagcaatttaccatggcctggcaaccctgcttaatcagccatccccaatg
atgcaaagagtttttgaccgccgtggctcaggtaaaccccgaccaaagagtgaaggattt
gagctgtataacaactccactcaaaatggatcacctgagagccctcagctgccgtggacc
gagtacagtgaaccaaagaagctgccaggggatgacagattaatgaagaacagagccgat
catcgctccagccccaatgtagcaaatcagcctccaagccccgggggaaagaatgcttat
gcatctggaactaccaccaaaataacctcagtctctactggaaatctttgtacagaggaa
cagactcctcccccacgacctgaagcttatcccatcccaacacagacctatactagagaa
tatttcacattcccagcttcaaagtcccaggatcgaatgggtccacctcagagtcagtgg
ccaaattatgaagaaaaaccacaggtccaggcagaaagcaatcattcgatcaattcaaca
atgcagcgtgtcgctcgttcccaggaagaactccgagataaagttttccagccagagagg
aatcgtttggaagttgttatacggaaggacgtagagtacattgatcggaagtcagacagt
gatcagtggatgaattcatctgtggattctagcacatctagccaagaacacctgaaccat
tcatccaaaccggtctcgcctggttcttgtttaactaaaagtggacctggccgttggaaa
actccagctactagccagacgactccagtggccatttcccagcccatcagaacagatctt
ccccctccaccgccacctcctccagtgcattatgcagccgaatttgatgaactacaaatg
gatttgcctctgcctccgcctcctcctccaaatcagataggagcccaagcatcctcccag
gtagctgctgctgagcgtaaaaaaagagaagagcatcagaggtggtatgaaaaggaaaag
gcacgtttggaagaagaacgagaaaggaaacgtcgcgagcaggagagaaaactgggccaa
atgcgttctcagccactaattcctgctcagcccgtggttcctcctgtttcccttcaacaa
gtgaaatcagaaaaaccttcaactttgcagaggtctcaagaaacagttattcgagagttg
cagccccaacagcagcctcggactattgagcggagagatctgcagtacattactatcagc
aaggaagaactgtcctctagtgacagcctctctccagatccctggaaacgggatgcaaag
gagaaactggagaagcagcaacagatgcacattgtggacatgctgagcaaagagattcag
gaacttcagaacaagcctgatcgtacagcggaagaaaatgaccgtctccgcaaactcatg
cttgagtggcagttccaaaagcgacttcaagaatcaaagcaaaaggatgaagatgatgat
gaagaggaggatgatgatgtggatactatgctcatcatgcagcgactggaggcagaaaga
agagcgaggcagactgctgtgccagcaatctctgttctagatttgttacaggatgaagaa
cgcagacggcagcaacagttggaagaaatgcgcaaacgagaagcagaagacagggccagg
caggaagaagagcgccgacagcaagaggaggagcggaccagaagagaggctgaagaaaag
aggcgtcaggaagaggagtattacagtcgattagaggccgaaaggcgcaggcagcacgat
gaagcagaacgaagattactggaacctgacgagcctggtctgtacagacctccgcttcca
cgggaatatgaactcccatccccaaccccttcatctaacgctcctcctcccccacctcag
cgaaacacctcttacctcaaaacacaggtcctctcccctgacacgatttatactgccaag
tttgttgcatacaatgatgatgatgatgaggaggaggattccaatctagcaggtcaggat
aagtactccagcacaagaaaatcttatggtgactttcctcctgccacccctaagccacag
cagccctcccgccagcctcgcccagtttcagatggcctctttctttccaactcattccag
tcatctccagtcaatgccaacagtactgctgccaaaaaaagccagcccccaccccctcca
aacaaaccgggttccatccatgccagcagctctaaaggaataaattcgtacactggatct
ggaggagcagctgttggagcccatgaagtttatcgggatccaagagacaaaagatctaaa
agtcaagatacagatttacctggagcaccagaaaacctgacgttcagggaacgccagcga
cttttttcacagggtcaggatgtatccaataaagtaaaagcttctaggaaattaatggaa
ctggaaaatgagttgaacacaaaataa
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