Chroicocephalus ridibundus (black-headed gull): 134513573
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Entry
134513573 CDS
T10910
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crid03041
]
134513573 (DDX1)
03016 Transfer RNA biogenesis [BR:
crid03016
]
134513573 (DDX1)
Enzymes [BR:
crid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134513573 (DDX1)
Spliceosome [BR:
crid03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134513573 (DDX1)
Transfer RNA biogenesis [BR:
crid03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
134513573 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
134513573
NCBI-ProteinID:
XP_063186566
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All DBs
Position
3:115467395..115485692
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPDGSVVKSQHSGNAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttttcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttcttcctacggatatccaagcagaatccatcccactgatcctgggaggtggt
gatgtacttatggctgctgaaacagggagtggaaaaactggtgcttttagcattccagtt
atccagattgtttatgaaacactgaaggaccagatggaaggcaagaaagggaaagcaact
attaaaactggtggggcagtgctgaataaatggcaaatgaacccgtatgatagaggatca
gcttttgcaattggatcagatggtttgtgttgtcaaagcagagaagtaaaagaatggcac
ggatgcagagcaactagaggcgtgactaaagggaaatactactatgaagtttcctgccat
gaccaaggcctgtgcagagttggttggtcaactatgcaggcttcactagatttgggcact
gataaatttggctttggctttggtggcactggtaagaagtctcacaacaagcagtttgac
agctatggtgaggaattcactatgcatgatacaattgggtgttatctagacatagataaa
ggacaaataaaattttccaaaaatgggaaggaccttggtcttgcgtttgaaatcccacca
cacataaggaaccaagcactttttgcagcttgtgtactgaagaatgctgagttgaaattc
aattttggcgaagaagacttcaagtttccaccaaaagatggctatattggtctttgcaag
gctcctgatggtagtgttgtaaaatcacaacactcgggaaatgcacaagtggttcaaaca
cagaatcttccaaatgctccaaaagcattgattgtagaaccctcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaactaagggaa
ctgttgattattggtggagttgctgcaagagatcagctgtctgtactggaacaaggagtg
gatattgttgttggaactcctggaagactggatgacctagtctcaacaggaaagcttaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcataaacaggatccacagtcagattcctcagataacttcggatggaaagaga
cttcaggtgattgtgtgctctgcaacactacattctttcgatgtgaaaaaactatctgaa
aagatcatgcattttcccacctgggttgatctgaaaggagaagattctgtacctgaaact
gtacaccatgtagttgtgcctgtaaatccaaaagctgacaaactctgggaaaggctcggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacgacctggtgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgggca
atcaaagaacacaagatggaccaagccattattttctgcaggactaaaattgattgtgat
aatatggagcagtacttcatccagcagggcggaggccctgataggaagggacatcagttc
tcatgtgtctgcctgcatggtgacagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacggatgttgctgctagaggaattgat
attcacggtgtcccgtatgttatcaatgtcacactccctgatgaaaaacagaactatgtt
catcgaattgggagagtaggcagagctgagaggatgggtttggcaatctcccttgtggca
aaagagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgctataat
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattgcccaagttgaaccagacataaaagtacca
gtagatgattttgatgggaaagttacatatgggcagaaaagagctctgggtggtggactg
tataaaggccatgtggatattctggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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