Chroicocephalus ridibundus (black-headed gull): 134513814
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Entry
134513814 CDS
T10910
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
crid03037
]
134513814 (IFT88)
Cilium and associated proteins [BR:
crid03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
134513814 (IFT88)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_7
TPR_8
TPR_19
TPR_6
TPR_14
TPR_16
CFAP70_TPR_C
ANAPC3
TPR_11
RMD1-3
DUF6340
TPR_10
TPR_17
ARM_TT21_4th
TPR_9
ARM_TT21_5th
TPR-S
TPR_15
TPR_CcmH_CycH
CNOT10_TPR
TPR_YpiA_C
ARM_TT21_C
TPR_21
DUF6584
DUF2989
CFAP70_mid_TPR
Coatomer_E
TTC22_N
HAT_PRP39_C
RMD9_mid
TPR_24
FumaraseC_C
TPR_Psidin_N
NBD_SMAX1
ARM_TT21_2nd
Nab2
GnHR_trans
Motif
Other DBs
NCBI-GeneID:
134513814
NCBI-ProteinID:
XP_063187055
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All DBs
Position
1:22416869..22463488
Genome browser
AA seq
823 aa
AA seq
DB search
MFHRKMMQNVHLAPEADEDDLYSGYNDYNPTFDTEDLENDVAFQQAARTSHGRRPPVTAK
IPGTSASRPLATGFGSKATLTSSMGRPMTGAIQDGVARPMTAVHAAGYTKAAMRGSSFDP
LGQARGPAPPLEMKNSDSSEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKEAGRKE
RVLVRQREQIATPENINLDLTYSVLFNLASQYAANEMYAEALNTYQVIVKNKMFSNGGRL
KVNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGVAFIKTGQYVDAISSF
EQIMSMSPNLKAGFNLIVCYFAIGNTEQMKKAFQKLIAVPLEVDYDDKYISPNDDPHTNL
LIEAIKNDSLRQIERERKSMAEEYIMTAAKLIAPVIETSFAVGYDWCVEVVKASHYVELA
NDLEINKATTYLRQQDFNQALETLKMFEKKDSRVKSAAATNLSFLYYLENELAQATNYAD
LAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNLGLTYKKLNRI
DEALDCFLKLHAILRNSAQVLHQIASIYEIMEDPNQAIEWLLQLISIVPTDPHVLSKLGK
LYDNEGDKSQAFHYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIEYFERAALILPTEV
KWQLMVASCYRRSGNYQKALEKYKVIHRKFPENVECLRFLVRLCTDMGLKEVQEYVTKLK
KVEKLKEIREQRIKSGRDGSARSRREGNAGGDSGGTKGERLSVKLKALPGTSEPYESSGS
KEIDASYIDPLGPQAERPKTAARKRTEEDDFADEELGEDLLPE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtttcacagaaaaatgatgcaaaatgtgcatctggctcctgaggctgatgaagatgat
ctttattctggctacaatgattataaccccacgtttgacacagaggatttagaaaatgat
gtggcttttcaacaggcagcaagaacaagtcatggtagaagacctcctgtgacagccaaa
attcctggtacatcagcttcaagacctttagctactggatttgggtcgaaggcaacttta
acttcatctatgggaagaccaatgacaggagctatacaggatggggttgctcgaccaatg
acagcagtgcatgctgcaggttacactaaggccgctatgagaggttcttcatttgatcct
cttggccaagcaaggggtcctgctccacctctggaaatgaaaaattcagacagttcagaa
gagaagattaggcagttggaaaaaaaagtgaatgaactggttgaagaaagctgcattgcc
aacagctgtggagacttgaaattggctctggaaaaagcaaaagaggctggaagaaaggaa
agagtattggtgagacaacgtgaacaaattgctaccccagaaaacatcaacttagacctc
acttactcagttcttttcaatctggccagtcagtatgctgctaatgaaatgtatgctgaa
gcactgaatacttatcaagttatagtgaagaataagatgttcagcaatggaggtagactg
aaggtgaatatgggaaatatatatttaaaacaacggaactattccaaagctatcaaattc
taccgtatggctctagaccagattcctagtgtccacaaagaaatgaggattaaaataatg
caaaatatcggagttgcattcattaaaaccggccaatatgttgatgccatttcttcattt
gaacagataatgagcatgtccccaaacctgaaagcaggcttcaacttgatcgtatgttat
tttgctattggaaacactgagcagatgaaaaaagccttccaaaaactgattgcagttccc
ttggaagtggattatgatgacaaatacatatcaccaaatgatgatccacatacaaatcta
ctgattgaagccattaaaaatgacagtttaagacaaatagaacgtgagaggaaatccatg
gcagaggaatacatcatgacagctgctaaactcattgcaccagtaattgagacgtctttt
gcagtgggctatgactggtgtgttgaggtagtaaaagcttcccactatgtagagttagcc
aatgacctggaaataaataaagcaactacttacttgaggcaacaggattttaaccaggca
ctggagactttaaaaatgtttgaaaaaaaggacagcagagtaaagagtgcagctgcaaca
aacctttccttcctttactatttggaaaatgaattggcacaagcaactaactatgcagat
ttagctgtaaattctgataggtacaatccagcagctctaactaacaaaggaaatactgtt
tttgcaaatggagactatgaaaaagcagcggagttttataaggaagctctcaggaatgat
tcctcatgcactgaagcactctataatcttggtttaacatacaagaagttaaacagaata
gatgaagctttggattgttttctgaaactccatgcgatccttcgaaatagtgcccaagtc
cttcaccagatagcaagcatatatgagatcatggaagatcccaatcaagccattgagtgg
ctcctgcagttgatcagcatagtaccaactgatccacatgtactttcaaagctagggaaa
ttatatgataatgaaggtgataaatcccaagcttttcattattactatgagtcataccgg
tatttcccttcaaacattgaggtcattgaatggctgggagcctactacattgacacccag
ttttgtgaaaaagccattgagtactttgaaagagcagcacttatcctaccgacagaagtg
aaatggcagctgatggttgccagttgctacaggagaagcggtaattaccagaaagcacta
gagaaatacaaagtcattcacagaaaattcccagagaatgttgaatgcctccgattttta
gttcgtctctgcacagatatggggctgaaagaagtccaggaatatgtgacaaagctcaag
aaagtggaaaaattaaaagaaataagagagcagcgcattaaatctggcagagatggcagc
gcacgtagccgcagagaaggaaatgctggtggtgatagtggtggtaccaaaggagaaaga
ctgagtgtcaaactaaaagctttgcctggaacaagtgaaccctatgaaagcagcggcagt
aaagaaatagatgcctcctacatagatccacttggcccacaagcagaaagaccaaaaact
gcagcaagaaaaagaactgaggaagatgattttgctgatgaagaactaggagaggatttg
cttccagaatag
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