Chroicocephalus ridibundus (black-headed gull): 134514579
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Entry
134514579 CDS
T10910
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134514579 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134514579 (CPSF2)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
134514579 (CPSF2)
U7-dependent histone pre-mRNA processing factors
134514579 (CPSF2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
134514579
NCBI-ProteinID:
XP_063188633
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Position
4:54192565..54213331
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AA seq
803 aa
AA seq
DB search
MKHFLPPSRLVLLEIKRLESKMTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEN
FSMDIIDSLRKHVHQVDAVLLSHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMY
DLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTI
WKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQL
LTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEF
SKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARVSSPKVVLASQPDLECGFSR
DLFIQWCQDSKNSIILTYRTTPGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKE
KLKKEAAKKLEQSKEADIDSSDESDAEEDIDQPTVHKTKHDLMMKGEGSRKGSFFKQAKK
SYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVP
TKCISASESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCR
AFGGKDIKVYVPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRV
SKVDTGVILEEGELREDEDLEMQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEETEIIPT
LEPLPPHEVLGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIG
LEGCLCQDFYRIRDLLYEQYAIV
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaaacattttcttcctccatccagattagttcttttggagattaaacgcttggagagc
aaaatgacgtcgattatcaagttgactacgctttcaggggtgcaggaggaatctgccctt
tgctatctcttgcaagtagatgaatttcgttttcttttggactgtggctgggatgaaaac
ttttctatggatattattgattccctgaggaaacatgtacaccaggttgatgctgttctt
ctttctcaccctgaccctctacaccttggtgctcttccatatgcagttggaaaaatgggg
ttgaattgtgccatttatgcaactattcctgtgtataaaatgggacagatgtttatgtat
gatctctaccagtcccgccataatactgaagatttcacactctttacattggatgatgta
gatgcagcctttgataagatacaacagctgaagttttctcagattgtgaacttaaaaggc
aaaggacacggtttgtcaatcacaccattgccagctggccacatgataggaggcacaatt
tggaagattgtcaaggatggagaggaagaaattgtttatgcagttgatttcaaccacaag
agggagatccatctgaatggatgttccttggaaatgttgagcaggccttcattgcttatt
acagactcatttaatgctacttatgtacaacccaggaggaagcaaagggatgaacagcta
ctgactaatgttttggagacattacgaggtgatggaaacgtattaatagccgtggataca
gcaggcagagttctggaacttgctcaacttcttgatcagatctggagaacgaaagacgca
ggattaggagtctactctctagcacttttgaataacgtcagctacaatgtagtggagttc
tctaaatcacaggttgaatggatgagtgacaagttgatgaggtgctttgaagacaagaga
aacaatccttttcagttccgccatctctccttatgtcacagtctgtctgatctggctcga
gtgtctagtccaaaagttgttcttgccagtcagcctgacttagagtgtggtttttctaga
gatcttttcattcagtggtgccaggattctaaaaactctataattttaacttatcgcact
acgcctggaacattagcacgattcctgattgataatccttctgaaaaagttatagatatt
gagttgagaaaacgtgtcaagttggaaggaaaagaacttgaagaatacctagaaaaggag
aaactaaagaaagaagcagctaagaagctagagcagtctaaagaggcagatattgattct
agtgatgagagcgatgctgaagaggatattgatcagccaaccgtacataagaccaaacat
gatttgatgatgaaaggtgaaggtagtcggaaaggaagcttcttcaaacaggcaaagaaa
tcttatccaatgtttccagcccctgaagaaagaattaaatgggatgaatatggcgagatt
atcaaacctgaggattttctagttccagaacttcaagcaacagaagaagaaaaaagcaaa
ttagaatctggtttgacaaatggagaagagcctatggaccaggatttatcagatgttcct
accaaatgtatttctgcatcagaatccatggaaattaaagccagggttacgtacattgac
tatgaaggacgctcagatggggactcaattaaaaaaataattaaccaaatgaaaccaaga
caactgatcattgtccatggaccacctgaggccagtcaggaccttgcagaatgttgcaga
gcttttggtggaaaagatattaaagtttacgtgccgaaactgcatgaaactgtagatgca
accagcgaaactcacatttaccaggtcaggttaaaagattctcttgtcagctcccttcag
ttctgtaaagccaaggatgctgagttggcttggatagatggtgttctggacatgcgagtt
tccaaagtggatactggagttattttggaagagggagagctgagggaagatgaagactta
gaaatgcaagtggatatgccttcttcagactctagtgtcattgcacaacagaaggccatg
aaaagcctctttggtgatgatgacaaggagatgtgtgaggagaccgagatcattcctact
ctggaacctctgccgcctcatgaggttcttggacatcagtctgtgtttatgaatgagccg
agactgtctgacttcaagcaagttctcctgcgagaaggtatacaggctgaatttgtagga
ggagtgcttgtgtgcaacaacctggtggctgttcgcaggactgaaacagggcgcattgga
ttggaaggctgcctctgtcaagacttctataggataagagaccttttgtatgagcaatac
gctattgtctaa
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