Chroicocephalus ridibundus (black-headed gull): 134514611
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Entry
134514611 CDS
T10910
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134514611 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134514611 (CSTF3)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
134514611 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
134514611
NCBI-ProteinID:
XP_063188710
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Position
4:complement(9686829..9737523)
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AA seq
718 aa
AA seq
DB search
MSGEGAAGDQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVA
QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV
HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE
KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSAS
ELKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAP
PGLHPVPGGVFPVPPAAVVLMKLLPPPVCFQGPFVQVDELMEIFRRCKLPDTVDEAVRII
TGGLPEIAVEGNGPVENNAMLNKAVKRPHEDSDDDEEKGSVVPPVHDIYRARQQKRIR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagagggagctgccggcgaccaggctgctgaatatgtcccagaaaaagtgaag
aaagctgaaaagaaactagaagaaaatccatatgaccttgacgcttggagcattctcatt
cgagaggcacagaatcaacctatagacaaagcacggaagacctatgaacgccttgttgcc
cagttccccagttctggcagattctggaaactgtacattgaagcagagattaaagcaaaa
aattatgacaaagtggaaaagttatttcagcgatgccttatgaaggttttacacattgat
ttatggaaatgttacctttcctatgtacgagaaaccaaggggaagctacctagttacaaa
gaaaaaatggctcaggcatatgattttgctctggataagattggcatggaaatcatgtca
taccagatctgggtggattacatcaattttttgaagggcgtagaagcagtaggatcttat
gcagaaaaccagaggataacagctgtccgtagggtttaccagcgtggttgcgtgaatcca
atgataaacatagaacagctctggagagattataacaaatacgaagagggcatcaatatt
cacttagctaagaagatgattgaagacaggagtagagattatatgaatgcacgacgtgta
gcaaaggagtatgagacagtgatgaaagggctggaccgcaatgctccctccgtcccccca
caaaataccccccaggaggctcagcaggtagacatgtggaagaaatacatccagtgggaa
aagagcaatcccctgcgcacggaagatcaaactctcataacaaaaagagttatgtttgcc
tatgagcaatgccttttggttctgggacatcacccagatatctggtatgaagctgcacag
tacctcgagcaatctagtaaactgctagctgaaaagggggacatgaacaatgctaaactt
ttcagtgatgaggctgctaatatttatgaaagagcgatcagcactttattaaagaagaat
atgcttctttattttgcatatgcagattatgaagagagtcgaatgaagtatgagaaagta
cacagcatatataaccgactcctggctatcgaagacattgatcccactctggtttatatc
caatatatgaaatttgcaaggcgagcagaaggcataaaatctggaagaatgatatttaag
aaagcaagagaggatgcccggacccgccaccacgtctatgtcacagcagctttaatggag
tattattgtagtaaggataaatctgtggccttcaagatttttgagctagggctgaaaaaa
tacggggacattccagaatacgtactggcgtacatcgactacctttctcaccttaatgag
gacaataatacaagagttttgtttgaacgtgttttaacttcagggagccttccacctgag
aaatctggggaaatctgggctcggtttttagcttttgaaagtaacattggtgatctagct
agtatactgaaagttgaaaaacggaggtttacggcgttcaaggaagaatatgagggtaaa
gaaacagctctgctggtagacaggtataagttcatggatttgtacccttgctctgctagc
gaactgaaggctcttggttataaggatgtctcccgggccaagctggcagctataattccc
gaccctgtggttgcaccttccatcgtgcctgttctcaaagacgaggtagacagaaaaccg
gaatatcccaaaccggacactcaacaaatgattccatttcagccaagacacttagcacct
ccaggtttacatcccgtcccgggtggtgtatttcctgttccaccagcagctgtagttctc
atgaagctcctgccacctcctgtttgttttcagggtccctttgtccaagtggatgagctc
atggaaatattcaggagatgcaaactgccagacactgttgatgaagctgtacgaataatt
accggaggcctgcctgaaatagctgtggaaggcaacggacctgtggaaaataacgctatg
ctgaacaaggctgttaagagaccacatgaagattctgacgacgacgaggagaaaggatcc
gtagttccccctgtacacgacatttacagagcacgacagcagaagagaatccggtga
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