Chroicocephalus ridibundus (black-headed gull): 134514998
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Entry
134514998 CDS
T10910
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134514998 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134514998 (PATL1)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134514998 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
134514998 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
134514998
NCBI-ProteinID:
XP_063189549
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All DBs
Position
4
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AA seq
766 aa
AA seq
DB search
MFRYQSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKP
VASREQDGPGGEEADLLGESEDTLAERLTRLVIDSELEDPAIMQAVQTRVPAQQPGGLNS
SIWDSSAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSPVIG
SPPVRAVPIGTPPKQAAVPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPASGFRAFFGAPPAPPPSQPQHPPGPGSHLQSLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSVGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMDERKQKICDMYDNLRGKAPGQERPSDDHFMQIMCIRKGKRLVARILPFL
SPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SATAPAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDANTELMQDNQWTELMLMATRE
LLRIPQAALAKPVSTPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtaccagtccctggaggactgcccgctggatgaggatgaagacgctttccag
gccctgggggaggaagatgaagatatcgaccagttcaacgatgacacgtttggagcaggg
gctgtcgacgacgactggcaggaggcacacgagaggttggcggagctggaggacaagccg
gtggcaagcagggagcaggatgggcccggcggcgaggaggcggatctgctgggcgaatcc
gaggatacgttggcggagcggctgaccaggctggtcatcgacagcgagttggaggacccc
gccatcatgcaagctgtgcaaaccagggtccccgcgcagcagcctggagggctgaattcc
agcatctgggacagctcggccgtcctgcggcgcatccgggggccgcttctcactcaggag
atgccgtcggtgtccgtgctggactatgctctgcctcagagacccccgcaggctcgagag
gaagagcgggacccctccgagcgggcgctgccccggcgttcatcctcccctgtcatcggg
agtccccctgtccgggctgtccccatcggcacccctcccaagcaggctgctgtgcccaac
ttcaaccagcagatcctatgtccgaagcctgtccatatccgagctaccatgcagcagcgc
taccccgctccctacggcgagaggatgtcccccaaccagctctgcaatgtaccgaattcc
tccctcctgggccacccattcccccacagcgtctctcccgtcctcacccacttgcagaga
gcgcagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtc
tctggcttggttgggagccccctcccctccgtcaatcccaagctgctccagggcagagtc
gggcagatgatgtctccggccagcgggtttcgtgccttcttcggggctccccccgctcca
cctccctctcagccgcagcacccgccgggccctgggtcccacctgcagagcctgaggccg
cagccccagatgttccgaccggacacgacccacctgcacccccagcatcgccggctcctg
caccagcgacagcagcagaaccgaaaccagcaccggagcctcaacggctcggtgggggac
cgagggggccaccggagcagccaccaggagcagatacgcaaagacccctacgctaacctc
atgctgcagcgggagaaggactgggtgtccaaaatccagatgatgcagctgcagagcact
gatccctacctggatgactattactaccagaattacttccagaagctggagaagttgtca
gcagcggaggaagtccaaggtgatggtcccaagaaggaacgcactaaactcatcacacct
caggtggctaagctggagcacacctacaagccagtgcagtttgagggttcgcttgggaaa
ctcactgtctccagcgtgaacaacccccggaagatgatcgacgcggtggtgacctcccgc
agtgaggatgacgagacgaaggagaagcaggttcgagacaagaggcgccagacccttgtc
acgatcgagaagacgtacagcctcctcctagacgtggaggactatgagagacgctacctc
ctgagcctggaaggcgagcggccagccctgatggacgagaggaagcagaagatctgtgac
atgtatgacaatctgaggggaaaggcgcccgggcaggagaggccgagcgacgaccacttc
atgcagatcatgtgcatccggaaagggaagcgcctcgtggcccggatcctccccttcttg
tcacctgagcaagcggccgacgtactcatggcgacggccaggaacctgcccttcctcatc
aagaaggatgctcaggacgaggtgctgccctgcctgttgaggcccttctcgcacgttctc
taccaccttcccttggggacggtcaccagccttgtgcagcagttaacgaacctacctcag
agcgccaccgcgccagcgcccaccaacctccacctcactgctgtgctccaaaacaagttc
ggcctgtccctgttgtacttggtcttgagccgcggggaggaattgcagagctcggacgcg
aacacggagctaatgcaggacaaccagtggacggagctgatgctcatggcgacccgggag
ctcctgcggatccctcaggcggccttggccaagccggtgtccaccccctccaacctgatc
tccctcttctctcgctacgtcgaccagcagaagctgaacctgctggagacaaaattgcac
ttagtgcacgggatccggtag
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