Chroicocephalus ridibundus (black-headed gull): 134515299
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Entry
134515299 CDS
T10910
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134515299 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134515299 (CNOT1)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134515299 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134515299 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
134515299
NCBI-ProteinID:
XP_063190184
LinkDB
All DBs
Position
4:complement(73842831..73902748)
Genome browser
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLISPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctcattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgttcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagatcgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggtttttgtacaagtgtcgaagaatgtcgcaacataatcgtgcagttt
ggtgttcgggaagtcacagctgcccaggttgccagggttttggggatgatggctcgaact
cattcggggttgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgacgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaggagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccatccgggatttcagattcgtgacagcaagggcctgcatattgtagtgtttggt
atccagagggggctgggcatggaagtttttccagtgaatgccatatacagaccgtggaag
catgcagagggccagctctccttcattcaacattccctcataagccctgaaatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgttggtattggccttactgcagatcaacacttcctggcataccttgcgccac
gaactcatctccacgctcatgccaattttccttggcaaccaccccaactctgccatcatt
ttgcactacgcatggcacggacagggtcagtctccttcgattcgacagcttatcatgcat
gcgatggcagaatggtacatgagaggggagcagtatgaccaggcaaaactgtcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcatgtctgcaggcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggcaagacagccaccacctggagtcatgccaaaaggacgtccacccagtgcc
agcagcttggatgccatctctcctgtacagatcgactcccttgcgggaatggcatctctt
agtttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccgaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcatttccccctctttccacccaa
aatcagacaacaggtttcagcggcatcggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aacgacccattcgtgcagaggaagctgagcacatctggactgaaccagccgacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagacgacgaggcaaacagctacttccagcgcatttacaaccatccacca
catccgaccatgtccgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggccttgccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagacgtgccgccttccattaataccaccaacattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaacgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaactgaaggaa
acagtgaaagaagagttcatgccttgggtgtcacagtatctcgtgatgaagcgagtcagt
attgagcctaattttcacagcctatattcaaacttcctcgacacgcttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaataagcccattttgcacacggatctggatgtgaaatcgctc
ctactggaagcatacgttaagggacagcaggaattgctttacgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagcgtggtcttcaggcctccaaacccgtggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctttgcaagaatcttgcactagacatcaatgagctgaagcctgga
agcctactgaaagataaggatcgtctgaaaaatctggatgagcagctctctgctccaaag
aaggatgtgaagcagccagaagaactaccgcccatcacaacaactactgcttctacaact
ccagccaccagcaccacttgtacagccacggttccgccccagccccagtacagttatcac
gacatcaacgtctattctttaggagggttggctcctcatattaccttaaacccaacgatt
ccgctgtttcaagcccacccgcagttgaagcagtgtgtgcggcaggcgatcgagcgagca
gtgcaagagcttgtccatccagtggtcgatcggtccattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcgttggattctgaggagtcacgaatgcgtgtggct
gcgcaccatatgatgcggaacctgactgctgggatggccatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaatagttttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagttagcgcaggataactgt
gagttggcgtgctgctttatccagaaaacagcggtggaaaaggcaggccccgagatggac
aagcggcttgcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgcgatcctgttgtgttaacttaccaggctgagcggatgccagaacagatcaggctaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggctttttgcctaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
cagcaagcttgggctacagatgacgtagcacaaatctacgacaaatgtatgacagaactg
gagcagcacctgcagtccattccacataccctggccatgaatcctcaagctcaagcattg
cgcagcctcttggaggctgtggtagtggctcgtaactcccgtgatgctattgctgcgctt
ggactactgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctatcgtgagtgtcatctgcttgtgctgaaggctctgcaggacggccgt
gcttatggatctccgtggtgtaataaacaaattactaggtgcctgattgaatgcagagat
gagtacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatg
cagcagtacgaccttcacttggcgcagtcgatggagaatggcttgaactacatggctgtg
gcgtttgccatgcagttggtaaagatcctgttggtggatgagagaagcgtcgcccacgta
acagaggcagatctgtttcacacaattgaaacactcatgaggattaatgctcattccaga
ggaaacgccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagca
atgattgaccgtgctcacggaggtcccaatttcatgatgcattcaggaatttcccaagcc
tctgagtacgatgatccgccgggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcgggccgtgacagtaccaaagcattctcggcgttt
gttggacagatgcaccagcaaggaatcctgaaaacagatgacctgatcacccgctttttc
cgcctttgcaccgaaatgtgtgttgaaatcagttatcgtgctcaggccgagcaacagcac
aaccctgctgccaaccccaccatgattcgagccaagtgctaccacaacctggatgccttt
gtgcgacttattgcgctgctagtgaagcactcgggggaggcaaccaacacagtcacaaag
atcaacctcctgaataaggttctcggtatcgttgtgggagttcttctgcaagaccatgat
gttcggcagagtgagtttcagcaacttccttaccatcgcattttcatcatgttgctgttg
gaattaaatgctcctgagcatgtgctggagaccatcaacttccagacactcacagctttc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagttactgatcgatcttttcaagtacttggctcctttcctt
agaaatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttg
ctggtcctgttgcatgatttcccagaatttctttgtgactatcactatgggttctgtgat
gtgatcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaac
atgaggcttccagaccccttcacccccaatctaaaggtggacatgttaagtgagattaat
attgctccacgaatactcacgaatttcactggagtgatgccacctcagttcaagaaagat
ttggattcctatctcaaaacccgttctccggtcacttttttgtctgacttgcgcagcaac
ctacaggtatcaaatgaacctggaaaccgctacaacatccagctgattaatgcactggtg
ctctacgtaggtactcaagctattgcgcacattcacaacaaaggcagcacaccctctatg
agcaccattacccactcagctcacatggacatcttccagaatctggcagtagacctggac
actgaaggccggtaccttttcttgaacgccatcgccaaccagctgcgctatcccaacagt
cacacccactacttcagttgcaccatgctgtacctgtttgctgaggccaacactgaggcg
atccaggagcagatcaccagggttctcttggaacgattgattgtaaataggcctcatccc
tggggtctccttattactttcatcgagctgattaaaaacccagcgtttaagttctggaac
catgagttcgttcactgcgctccagaaattgagaagttgttccagtcagttgcacagtgc
tgcatggggcagaagcaggcccagcaagtaatggaagggactggtgccagttag
DBGET
integrated database retrieval system
