Chroicocephalus ridibundus (black-headed gull): 134515841
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Entry
134515841 CDS
T10910
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
134515841 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
crid01009
]
134515841 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
crid04515
]
134515841 (PCDH20)
Protein phosphatases and associated proteins [BR:
crid01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134515841 (PCDH20)
Cell adhesion molecules [BR:
crid04515
]
Cadherins
Protocadherins
134515841 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
SGBP_BT4661-like
He_PIG
Motif
Other DBs
NCBI-GeneID:
134515841
NCBI-ProteinID:
XP_063191367
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All DBs
Position
1:complement(41190547..41196048)
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AA seq
948 aa
AA seq
DB search
MGSRGEARRRAGGGAGGPLGRSRRRRRQPGMGPPGSGGSSTSARGSLQHLFLFLLFVGPF
NCFASYSRATELFYSLNEGLPAGVLIGSLARDLRLPTASGQRPAAPQPPLSFTLASRGLG
GQYVQLDNRSGELHTSDVEIDREALCVESSGVTVFGGAASVSSSSSSPSSESCLLLLDVL
VLPQEYFRLVKVKIAIRDVNDNAPRFPVPHIRLSVPENAPVNTRLAIEHPALDPDVGTNG
VQTYRLRDNYGVFTLDVEENESGERTPYLIVMGALDRETREEYVTVIVAEDGGTPPLVGS
ATLTIAISDINDNCPQFSDSQLNVTLYGNSSLGTHLATVHAVDMDLGSNAQITYSYSQKV
PQPSRDLFHLDESTGAITLSSKVDGDTPRLHRLIILGNGPGCIPAVITVLVTIIKVMTRP
PEVVPRFIANEAEGVVYLKELEPINTPIAFFTIKDPDEKYKVNCYLEGDGPFRLSPYKPY
NNEYLLETTKPLDYETQQLYEISVVAWNSEGFHVNKIVKIQVLDDNDNSPIFSQQLIELS
IEENNVPNAFLTKLHATDADSGERGQVSYFLGPDAPSYFSLDKSTGVLTVSTQLDREEKE
KYRYTVKAVDSGFPPRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVISV
TDADAGQNGWVALSVLNGSDIFVIDTGKGVLRAKVSLDREQQSSYVLWIEAVDGGDPALS
STAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVIAYS
IIGRRGPRPESFRIDPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVNLFV
NDTVSNESYIESLLRKEPDISIEEKQPQISIEPTHKKMESASCMPTLVALSIISLGSIAL
VTGMGIYICLRKGKKHHRADENLEVQIPLNGRINLHMLEKKPMEISNI
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggcagccgcggggaggcgaggcgccgggcgggcggcggagcgggcgggccgctgggg
cgcagccggcggcggcggcggcagccgggcatgggtcccccgggcagcggcggcagcagc
accagcgcccgcggcagcctgcagcacttgttcctcttcctgctcttcgttggacctttc
aactgctttgccagttacagccgcgcgaccgagctcttctacagcctcaacgaggggctg
cccgctggggtgctcattggcagcctggcccgtgacctgcggttgccgacggctagtggg
cagcgccctgcggccccccagccccctctgtccttcaccctggcctcccgtggcttgggg
ggacagtacgtgcagctggacaaccgctccggagagctgcacacctcggatgtggagatc
gaccgggaagctctgtgtgtggagagcagtggggtcactgtctttgggggagcagcttct
gtctcctcctcctcctcctccccttcatccgagtcatgcctgctgctgctggatgtgctg
gtgctgccgcaggagtacttccgcctggtgaaggtgaaaattgctatccgggatgtcaac
gacaatgcgccccgcttccctgtgccccacatccgcctctcggtgcctgagaatgcacct
gtgaacacccgcctggctatcgagcacccagcccttgaccctgatgtgggcaccaacggt
gtccagacctaccgcctgcgagataactacggtgttttcaccctggacgtggaggagaat
gagagcggggagaggactccctacctgatagtcatgggggctctggacagggagacacgg
gaggagtatgtcacagtcattgttgctgaggatggggggactcctccgctcgtgggcagt
gccacccttactattgccatcagcgacatcaatgacaactgcccccaattcagtgactcg
cagctcaacgtcactctttatgggaattccagtctagggacacatttggccactgtacac
gcagtggacatggaccttggatccaatgcccagatcacctactcctacagccagaaggtc
ccccagccatccagagacttgttccatctggatgaaagcacaggagccatcacgctgtcc
agtaaagttgatggggacactccaaggcttcacaggctgatcatattgggcaacggtcct
ggttgtatccctgccgtgatcacagtgctagtgaccatcatcaaagtcatgacaaggccg
cctgaagttgtccctcgtttcatagctaatgaagcagaaggggtggtgtacttaaaggaa
ctggagcctatcaacacaccgatagcattttttaccatcaaagaccctgatgaaaaatac
aaagtcaattgctatttggagggtgatgggcctttcagactttcaccatacaagccatac
aataatgaatacctgttagagaccacaaagcctttggactatgagacacagcaactgtat
gaaatctctgtagttgcgtggaactctgaaggatttcatgtcaacaaaatagtcaaaata
caggttctggatgacaatgacaactcgccaattttctctcaacagctgatagaattatcc
attgaggagaacaatgttcccaatgctttcttgaccaagctgcatgctacagatgctgac
agtggagaaagagggcaagtgtcctattttttagggcctgatgctccttcctatttttct
ttagataaaagcacaggagttcttactgtttccacccagttggacagagaagaaaaagag
aaatacagatacactgtcaaagcagtagattctgggttccctccaagagaatcaatagca
actgtcaccatcaccgtactggataaaaatgataatagtccaagatttatcaataaggat
ttcagcttttttgtgccagaaaactttccaggttttggtgaaattggagttataagtgtc
acagatgctgatgcagggcaaaatggatgggttgccctttcagttctgaatggaagtgat
atttttgtcatagatactggaaaaggagttttgagagctaaagtctccctggacagggag
cagcaaagctcctacgttctgtggattgaagcagttgacggtggtgatcctgccctgtct
tctacagcaaaaataactatccttcttctggacataaatgacaacccccctttggtcttg
tttcctcaatctaatatgtcttatttgttggtccttccttctacccttcctggctctccc
atcactgaggtctatgctgtcgataaggacactggcatgaatgcagtcatagcttacagc
atcataggaagaagaggccctcgaccagagtcatttaggattgaccctaaaactggtaat
atcaccttggaagagtcactgatgcagaatgactatggcctctatcggctgcttgtaaaa
gttagtgatcatggctatccagaacctctccattccaccgtcatggtgaaccttttcgtc
aatgacactgttagcaatgagagctacattgaaagtttattaagaaaggagcctgatatc
agtatagaagaaaagcagccgcaaatatcgatagagcctacgcataaaaaaatggagtca
gcatcctgtatgcctaccttggtagctctgtcaataataagcttgggctcaattgcttta
gtaacagggatgggcatttacatctgtctaagaaaagggaaaaagcatcacagagcagat
gaaaacttggaagtacaaatcccattaaatggaagaattaacctgcacatgttggagaag
aaaccgatggagatttctaacatttga
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