Chroicocephalus ridibundus (black-headed gull): 134516247
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Entry
134516247 CDS
T10910
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
crid00536
]
134516247 (COL25A1)
Glycosaminoglycan binding proteins [BR:
crid00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134516247 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134516247
NCBI-ProteinID:
XP_063192287
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All DBs
Position
5:25871076..26194583
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AA seq
707 aa
AA seq
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MGGGGKEIKGAAAEGCKSAPGKSRGAAGRDGSGKPGSEKPGCGGGERCGSALAALLSALA
AASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAMMQEKVERLLAQK
SYEHLAKIRVAREAPPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGPPGPKGEKGDQGD
QGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGM
PGIPGEPGKPGEQGLSGPQGPPGQKGSVGVPGVPGRDGQVGEPGLPGIAGEKGAAGLKGD
PGERGEKGDTGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIK
GEPGFIGPQGEPGLPGLPGTKGDRGEAGPIGKGERGEPGVPGPKGKTGEPGSRGPKGSKG
DTGDRGDTGSAGPRGPPGQKGDQGATEIIDYNGNIREALQRIATLTVTGPPGPPGPQGLQ
GPKGESGSPGTPGVDGEQGPKGSKGDTGDPGMPGEKGGIGLPGLPGANGMKGEKGDVGLP
GAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGLKGLKGEPGQKGDRGPLGLPG
ASGLDGKPGPRGVDGPVGPHGPAGPKGDRGEKGTVGEPGPRGPYGLPGFPGPRGEKGDIG
EKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaaggtgccgcagctgaagggtgtaaaagcgcgccg
gggaagagccggggagccgcaggacgggatggcagcgggaagcccggcagcgagaagccc
ggctgcggcggcggggagcggtgcggctcggcgctggccgccctcctctcagcgctcgcc
gccgcctcctgcgtctacctgggggtgcggaccagcgacctccaggccagggtcgcggcc
atcgagggcgcccgagggggtttctctgccgccgccccgctgccgccgctgcccggcttt
tccctggagcagctgaacgcgatgatgcaggagaaagtggagcgacttctcgcccagaaa
tcctacgagcacttggcaaaaatacgagttgcgagagaagcgcctccagagtgcaactgc
ccaccaggtcctccagggaaaagaggtaagcggggcagaagaggagagactggacctcct
ggtcagcctggtcctcaaggccctcctggtccaaaaggcgagaagggagatcaaggtgat
cagggccctcggatggtgttccctaaaatcaatcatgggtttctctctgctgatcagcag
ctcattaaacgccgcctcattaagggggaccaaggacaagctggcccccctgggcctcca
gggccaccaggacccagaggtcccccaggagatactggcaaagatggtcctcgtgggatg
cctggcattccgggtgagccaggaaaaccaggagaacaaggattgtcaggacctcagggg
ccgccaggacaaaagggttctgttggagtgcctggtgttccagggagagacggacaagtg
ggggagcctggtttgcctggcatagcgggagagaagggagcagcagggcttaagggtgac
cctggagaaagaggagaaaagggggatactggagaaaatggaccgaagggtgacacagga
gaaaagggtgaccctggttcttctgctgcaggaattaagggtgaacccggtgaatctgga
cggcctggacaaaagggtgaaccaggtcttcctgggcttcctggactccctgggataaag
ggtgaaccaggtttcattggtccacaaggagaacctgggttgccagggctgccaggaaca
aagggtgacagaggagaggcaggccctattgggaagggcgagcgaggtgaacctggagtt
cctggaccaaaggggaaaacaggtgaacctggatctagaggccccaaagggtcaaagggc
gatacaggtgacagaggtgacacaggatctgcaggtccacggggaccacctggacagaaa
ggtgatcaaggtgcaacagagataattgattataatggcaatatccgtgaagctctgcag
aggattgccaccctgactgtcacggggccaccaggaccaccaggaccccaagggctgcaa
gggccaaagggtgaatcaggatccccaggaactccaggagttgacggggagcagggtcct
aaaggctcaaaaggagatacaggtgatcctggaatgcctggggaaaagggaggaattgga
ctgcctggcctgccaggagccaatggtatgaaaggcgaaaaaggagacgttggtttgcct
ggtgcccaaggtccttcaatgataggaccacctggaccaccagggccacatggtcctcca
ggccctatgggacctcatggactgcctggcccaaagggtgaaccagggttaaatggtctt
aaaggattgaagggtgaaccaggtcaaaagggtgacagagggccccttggtcttccagga
gcatctggcttagacggaaagccaggaccccggggtgtagatggcccagttggtccccat
ggccctgcaggtcctaaaggagacagaggtgaaaagggaactgtaggtgaacctggaccc
agaggaccatacggcttgcctggtttccctggtcctcgaggagaaaagggtgatatagga
gaaaagggagaaaagggggaaaagggaaagaaaggcaaaaaggggcctaaaggggagaaa
ggagaacagggtgctcctggattagatgcaccttgcccattgggtcccgatggattacca
atgcctggctgttggcaaaagtga
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