Chroicocephalus ridibundus (black-headed gull): 134516316
Help
Entry
134516316 CDS
T10910
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04010
MAPK signaling pathway
crid04210
Apoptosis
crid04218
Cellular senescence
crid04620
Toll-like receptor signaling pathway
crid04621
NOD-like receptor signaling pathway
crid04622
RIG-I-like receptor signaling pathway
crid04623
Cytosolic DNA-sensing pathway
crid04625
C-type lectin receptor signaling pathway
crid04920
Adipocytokine signaling pathway
crid05132
Salmonella infection
crid05164
Influenza A
crid05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
134516316 (NFKB1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
134516316 (NFKB1)
04218 Cellular senescence
134516316 (NFKB1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
134516316 (NFKB1)
04621 NOD-like receptor signaling pathway
134516316 (NFKB1)
04622 RIG-I-like receptor signaling pathway
134516316 (NFKB1)
04623 Cytosolic DNA-sensing pathway
134516316 (NFKB1)
04625 C-type lectin receptor signaling pathway
134516316 (NFKB1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
134516316 (NFKB1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
134516316 (NFKB1)
05168 Herpes simplex virus 1 infection
134516316 (NFKB1)
09171 Infectious disease: bacterial
05132 Salmonella infection
134516316 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crid03000
]
134516316 (NFKB1)
Transcription factors [BR:
crid03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
134516316 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
134516316
NCBI-ProteinID:
XP_063192432
LinkDB
All DBs
Position
5:complement(28263750..28323709)
Genome browser
AA seq
996 aa
AA seq
DB search
MAGEDSYIMGVSDPQMFAMEQFMGMNALFNNTNYITSDLPLRTADGPYLQIIEQPKQRGF
RFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVG
KFCEDGVCTVNAGPKDMVVGFANLGILHVTKKKVFETLETRMIDACKKGYNPGLLVHPEL
DYLQAEGCGDRQLTEREREIIRQAAVQQTKEMDLSVVRLMFTAFLPDSNGSFTRRLDPVI
SDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGMWE
GFGDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKD
CSLEFSLLVSVSMPDKEEVQRKRQKLMPNFSDGYGGGSGAGGGGMYGGGGGGAGSGFSYP
SYGYSAFGGMHFHPGTTKSNAGMKHGLSNSTAEQDGKSSDKQSDKWDMKRDVKVVTTERN
ECRTSGDEEEEEDASSCKTEVNEADHRWQDGLFLEKAMQLAKRHCNALFDYAVTGDVKML
LAVQRHLTVVQDDNGDNVLHLAIIHLRTELVKNLLEVIPDFNYNDIINMRNDLYQTPLHL
AVITKQAEVVEDLLKAGADVSLLDRHGNSVLHLAATEGDDKILSLLLKHKKISPMVDLSN
GEGLSAIHMVVMANSMSCLKQLIAAGVNVNAQEQKSGRTALHLAVEQENIPLAGCLLLEG
DADVDSTTYDGTTPLHIAAGRGSTKLAAVLKAAGANPHVENFEPLFEVDDMKGDEDDDEG
IVPGTTPLDMAANCEVYDILNGKPYESAVVSEDILTQGHLRQLNESSKMQLYKLLELPDP
NKNWSTLAQKLGLGILNNAFRLSPSPSKTLLDNYEVSGGTVQELIAALRQMDHTEAIEII
QKALSISQSPSRLEENTSKALPSSPPPTFANGETGELYNSKFQDNESTCDSGVETSFRKL
SFTYSDSLNSKPSVTLSKMILGYGHESSVQSSYIAN
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaagattcctatattatgggagtgtctgatccccaaatgtttgcaatggag
cagttcatgggaatgaatgcattatttaacaatacaaattacatcacttcagacttacca
ctacgaacagcagatggaccatatcttcaaatcatagaacagccaaaacagaggggtttt
cgtttccgatacgtgtgcgaagggccttcacatggtggacttcctggtgcttctagtgaa
aagaacaaaaaatcataccctcaggtcaaaatctgcaattatgttggacctgcaaaagta
atcgtccagttagttactaatgggaaatacgtccacttacacgctcacagtttggtgggt
aaattttgtgaagatggagtatgcacggttaacgcaggacctaaagatatggttgtaggg
tttgcgaatcttggaatacttcatgtcacaaagaagaaagtgtttgaaactctggaaaca
cgcatgatagatgcttgcaaaaaaggatacaacccgggactcttggtgcatcctgaactt
gactatctgcaggcagaaggatgtggagacagacagctaactgaacgtgaaagagaaatt
attcgtcaggcagcagtacagcagactaaagaaatggatctcagtgtggtgcgtctgatg
tttacagcttttctccctgacagtaacggtagtttcacaaggagacttgatcctgttata
tcagatgcaatatatgacagcaaagctcccaatgcctccaacttaaaaatcgtaagaatg
gacagaacagcagggtgcgtaacaggaggggaagagatttaccttctctgtgataaggtt
cagaaagatgatattcaaatacgtttctatgaagaggatgagaacggtggtatgtgggaa
ggctttggagacttttctcctacagatgtacatagacagtttgctattgtgttcaaaaca
cccaagtatcgagatgtcaatatcacaaagccggcatctgtatttgtacaattgcgtcgg
aaatctgatctagaaacaagcgaaccgaagccttttctctactatccggaaatcaaagat
tgctctctagagttttctctcctcgtcagtgtgagtatgcctgataaagaagaagtgcaa
agaaaacgacagaagctcatgccaaacttctctgatggctatggtggaggcagtggtgca
ggaggcggtggcatgtatggagggggaggtggcggtgctggctctgggttcagttaccct
tcatatggatactctgcttttggagggatgcatttccaccctggcacaacaaagtccaat
gctggaatgaaacatggactatcaaatagcacagctgaacaagatgggaagagctctgat
aaacaaagtgacaaatgggacatgaaacgtgatgtgaaagtggtaactacggagaggaac
gagtgcagaacctctggtgatgaggaggaggaggaggatgcttcttcctgtaaaactgaa
gtaaatgaagcagatcacaggtggcaagatggtctgttcctggagaaggccatgcagctt
gccaagcgtcactgcaatgctctctttgattatgctgtaactggggacgtgaagatgctg
ttggctgttcagcgccatctcactgttgtccaggatgataatggagacaatgtccttcat
ttagcaattatccatcttcgtactgagctggtgaaaaacctcttggaagtgatacctgat
ttcaattataatgacatcattaacatgagaaacgacctttatcagacccccttgcacctg
gcagtaatcacaaagcaggcagaggtggtagaagacctgctgaaggctggagcagatgtc
agccttctggatcgccatggtaattctgtcttacatttagctgctactgaaggagacgac
aagattttgagtctactcctcaagcataagaagatatctccaatggtcgacctttccaat
ggtgaaggtctcagtgcaattcacatggtggtgatggcaaatagcatgtcctgcctcaaa
cagctgatcgctgctggagttaatgtcaatgctcaggaacaaaaatctggacgaactgca
ttgcatttagctgttgaacaagagaacatccctttggccggttgccttttgcttgagggt
gatgcagatgtggacagcactacatatgatgggacaactcctcttcacatagcagctgga
aggggctctacgaaattggcagcagttctcaaagcagcaggtgcaaatcctcatgttgag
aactttgagccgttgtttgaggtagacgatatgaaaggtgatgaagatgatgatgaaggg
attgtgcctggaacgacaccactggatatggcagccaactgtgaggtgtatgacatacta
aacggcaaaccctacgagtcagcagtggtttcggaggacatactgacacaaggacatttg
agacagctgaatgaaagttccaagatgcagctttacaaactattggaattgcccgatcca
aacaaaaactggtccactctagcgcaaaaactgggtcttggcatacttaataatgccttc
aggttgagcccttccccatcgaaaactctgctagataactatgaggtttctggtggtaca
gttcaagagttgattgctgctttgaggcagatggatcacacagaagccattgaaatcatt
cagaaagcactatccatctcacaaagcccgtctcgcctggaggaaaatacgtcaaaagct
cttccgtcatcaccaccacccacctttgcaaatggagagacaggcgagctttataatagc
aaatttcaagacaacgaaagcacgtgtgacagtggtgtggagacctccttccgcaaactg
agctttacttattcagactctctgaacagcaagccatcagtaacacttagcaaaatgatc
ctgggctatggacatgaaagttcagtgcaaagcagttatatagctaactag
DBGET
integrated database retrieval system
