Chroicocephalus ridibundus (black-headed gull): 134516517
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Entry
134516517 CDS
T10910
Symbol
DCHS2
Name
(RefSeq) protocadherin-23
KO
K16507
protocadherin-16/23
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
crid04515
]
134516517 (DCHS2)
Cell adhesion molecules [BR:
crid04515
]
Cadherins
Cadherin related
134516517 (DCHS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Mannosidase_ig
Cadherin_4
CADH_Y-type_LIR
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
134516517
NCBI-ProteinID:
XP_063192845
LinkDB
All DBs
Position
5:complement(35841030..35965189)
Genome browser
AA seq
3301 aa
AA seq
DB search
MARRLRGGRCRGGRGGGGGGPTGRALALLVPLWWLWAAGGGAAPVYNLSLAVDEGLPAET
LVGDIRAGLPAGAGPPGGFLLSEGSGESAVLADFHVQPETGIIRTARRLDRERRARYSFA
AATLRGEVVQVEIAVTDVNDHPPRFPRDCLQLNVSELSPPGTAFRLPSARDPDAGRFGTQ
GYALLEEGGAAGEPPLFQLRYGRPEPLELVLLRRLDRERAETHRLVVEAWDGGSPRRRGR
LQVSVRVLDENDNAPAFSRAEYRARLREDAPPGTAVCRLRATDPDLGANGEVRYAINRRQ
SDPDGYFAVEERSGMLRLRRPLDREARALHRLVVEARDGGSQPEVSSALVSVAVLDVNDN
RPVIRLLYLTESGGPRVSEGARPGDYVARVSVSDADEGGEAAAGAEDGGGGVALSLLGGD
GAFALRPAGAGVFFLCVAGPLDRERRDLYELRLVATDGGAPPLSAEEPLLLRVADLNDEA
PAFPQPHYRAAVSEAASPGTAVLRLSAWDADEPGSPNAEVRYALEGDAAALALLRIDARS
GAVSTRARLDRERQAALELRVVARDGGRPPRAAACRLSVRVEDANDNEPRFERQVYRGRL
PEHAPPGRCPLQVKATDADADQFGEIEYFLYDGFHYYEKSKAFQIDPRTGQICVSQDIDR
EGDPTTYDLLVKATDGGGLSAQAFVRIEIEDINDNQPVFEQAVYVTSISSHTQPGTEIIN
VVATDRDSGIYGVVTYEMVPGEFSSFFTVDTSTGIIYLISALGHLACSALLLTVSARDGG
GLPSAINAAITVNILQTGSAPAVFERSRYTFSVPEDTPEDSPIGTVKAREPPNSLEVVSY
RISSGDPHGRFSIDPQFGIIRTKTQLDHETQSVVVLTVQSQLGDSPVYSSTQVNISVIDI
NDNPPVFLTQSDRVTISHTQPPGTAVYIAHAEDKDSGLNGAIKYSIASKQSNAFSIDPSL
GVINLTRTVFADKQHAYTLQIAAEDSGIPPLTSSLMLTVIIEEQKMGPTLVFQNLVYQVE
ISEATSPGAQILQVQAHSLDPHSVTSKLTYSLEPSTDSVAFGIISDTGWIYLRKRLNYEC
AQILSFRVLVSTPEHENLRQNASTLVIVNVLDENDNSPMFMRESYFFELEENPIPRGVVG
TITAVDKDSGRNGQLSYFLLSDGKYFKINSNTGEIINWVALDREKQAHHQLTVLVTDHGS
PRLNATAAVFIAVRDLNDNEPLFPQAAPGRELRLKVLEGQPSGTLITTVFAKDFDSGSNG
VVLYSIEPEEDIGYFQIDAVSGELRTTRSLSHAERPDYRMMVTARDQGMPSLQGRAAVYI
QVIPLPNGRSVFSQDFKHFVIPENCKPAQVLNFLKWPENHLTTNRKLHFSIAKEDDDVHF
EIDSLTGDLFLSKELDYETASHFLLQVIIKDYNNNPQQNNTVFLSIDVEDQNDHSPYFQD
HFVVIGIEENVPVGTLVYTFNAKDGDGGFLNSKIQYSLEMSNMSKNPFLIHPSHGTLTTA
FPLDREITRSVVLTVSAADQAINLTDRRLDSLAAKIVILDINDNSPSFTSSPLSYVMEDV
EVGFLVHRIIAKDPDEGRNGQVTYHILSGNENKAFILDKITGLLTTAQLLDREIQNCYNL
TLMALDDGSPALFATQVLTIVVLDVNDEAPMFLKQLYETAIRENQDPGEFVLKVEAVDRD
AGLNSLLRYEILPGTGYEKFKMNPDSGVLLTTASLDRETQEVFRIKVLVRDSGTPSLSST
VTVICTVLDENDHSPMFLLPTSEIHISENQQPSVVYIARAVDMDAGNNGVLRYKIIGGNV
GEYFTLNNTSGKLLVTRSLDREDISNFTLVIECRDLGSPSRSSTAQLYLTVLDENDHNPM
FAKTEYQISVREDLEEGSAILDLFASDKDDGLNGEVMYSLIDDTFGAFAIDSVTGSIVTT
KALDRETKSQYTFRAVASDCSTHLPRSTTVSVVVHVDDVNDNDPVFLQNPIRAFVPSETH
VNETVATVRAEDMDLGSNGAVVFRLMIAETVFQIDAKTGDIILQEPLASKDFSTQLLVTA
SDQGISPRTATAMVIIFTEEEEEEISFSHSLYEASVPENSAAGTSLLTVEAYEHKFTGEN
IKYSIFSDKESIFSIHPTTGAITVNKPKSLDYEAKNKIHLSVLAENSLNSALCGVTILIQ
DVNDNAPKFEQSYYKASVWEGQSPKTDIIQIFATDLDSGLNGETEYSVLSGNENATFVID
SARGILATNTVLDHENASSYRLVVQAADKGNPRLSATSIVRIQVLDVNDNAPVVQPLGEV
EVPENALSGFVVTRVSASDADSRPALQFGFIYDNSPGMKFAINEHTGVVTVVEPLDFEET
AVYKLRIVVSDSVHQTEAELVIRVLDVNDNPPVFTQDSYQVRLPELISMDAIVLTVSAVD
RDSGHNGMISYKILSSSEGFSIDHKNGSVFTTGPVTQLEKISIIQLLIEAMDGGSPTLSA
VTSVEVHVEDVNNYAPQFTRDLYNLSVSEDASVGESVLTFSTIDHDWTHENTYVEYSIID
GNTENLFSVETSIMELETSYKLVGSLVLSNVLDREMASSHRLVLLASDRGTPSLNSTATV
LITVLDVNDNSPVFSSPEYHIHVKESIPVGSHVTEVSANDCDAGTNAEITYAIISGNDRG
HFHLDEKTGSVDLMKTLDYEDTMKFILIIQATDGGTDVKNVAFSVVLVSVLDDNDYAPLF
LFPSLSCIVSENLPTFSFVCAVNALDFDKGSYGHLTYSIQSSCLAHREAPRDHDMFFIDP
LTGDIHTKQMFDYESQNRYCFIIQAKDKGDSLAVITVQVDIEGRDEFDPVFTQQEYFFNL
PEKNEAGQLLGRVTASDSDGGLDGVVHYSLLKSSPFFSVNQTSGNIYLTQTVHRRTNGSK
RNDDTLEFLIRAHSPKIESKSTVCTVLVNVSNSPESYPIMSAYSLTISVSVSLIVFLLLV
VSLTALILRHKRKDLMNSCVKKETVSSSATDVNSATEDKDCQKIQSTESSMLPMGAIAEW
LSLAGIREGKDDVVICRHSDSSGHSSAEGETAEDEEIKRINEHPCRKSAGSALSEHGSRV
PDSGIPRESDQLSCQSGEMDVVATMQSMESMQAIKGEGREEACDTAYAHKMLSQALKKIG
IKEKDIMTDLTREYVLMSDSQDSGCDSLATLGTSDEDTGGGYNWDYVLSWEPRFQPLASV
FNDIAKLKNENVHIHSFPKEKKSFVFPPPLITSVAQPGIRTVPPRMPNVTSGQAFKIHPR
SPLIHNLGYPPPTMTPSFSPSLSLLTIQTPTASPVMSDGKMIGTCLIDPSHELATEEEIQ
V
NT seq
9906 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggcggctgcggggcggcaggtgccggggcgggcgaggcggcggcggtggtggc
ccgacggggcgggcgctggcgctgctggtgccgctgtggtggctgtgggcggcgggcggc
ggcgcggcgccggtgtacaacctcagcctggcggtggacgaggggctgccggccgagacg
ctggtgggggacatccgcgcggggctgccggcgggcgcggggccgccggggggcttcctg
ctgtcggaggggagcggcgagtcggcggtgctggcggacttccacgtccagccggagacg
ggcatcatccgcacggcgcggcggctggaccgggagcggcgggcgcgctacagcttcgcg
gcggccacgctgcgcggcgaggtggtgcaggtggagatcgcggtcaccgacgtgaacgac
cacccgccgcgcttcccgcgggactgcctgcagctcaacgtctccgagctcagcccgccc
ggcaccgccttccgcctcccctccgcccgcgaccccgacgccggccgcttcggtacgcag
ggctacgcgctgctggaggagggcggcgcggccggggagccgccgctcttccagctgcgc
tacgggcggccggagccgctggagctggtgctgttgcggcggctggatcgggagcgggcg
gagacgcaccggctggtggtggaggcgtgggacggcggcagcccgcggcgccgcggccgc
cttcaggtgtcggtgcgggtgctggacgagaacgacaacgcgcccgccttcagccgcgcc
gagtaccgtgcgcggctgcgggaggacgcgccgccgggcaccgccgtctgccgcctgcgg
gccaccgaccccgacctgggtgccaacggggaggtgcgctacgccatcaaccgccggcag
agcgaccccgacggctacttcgcggtggaggagcgcagcggcatgctgcgcctccgccgc
ccgctggaccgggaggcgcgggccctgcaccggctggtggtggaggcgcgggacggcggc
tcccagcccgaggtctccagcgctctcgtctccgtggccgtgctggacgtgaacgacaac
cgccccgttatccgcctgctctacctcaccgagagcggtggcccgcgggtctccgagggg
gcgcggcccggcgactacgtggcccgcgtttccgtctcggacgccgacgagggcggtgag
gcggcggcgggcgcggaggacggtggcggcggcgtcgcgctgtccctgctgggcggcgac
ggcgccttcgcactgcgtccggccggcgccggcgtcttcttcctctgcgtggcgggtccg
ctggaccgcgagcgccgcgacctctacgagctgcggctggtggccaccgacggcggcgcc
ccgccgctctccgccgaggagccgctgctgctgcgcgtcgccgacctcaacgacgaggcg
cccgccttcccccagccccactaccgcgccgccgtctccgaggccgcctccccgggcacc
gccgtcctccgcctcagcgcctgggacgccgacgagccgggctcgcccaacgccgaggtt
cggtacgcgctggagggggacgcggccgccctggccctcctgcgcatcgacgcgcggagc
ggcgccgtcagcacgcgcgcccgcctggaccgggagcggcaggcggcgctggagctgcgc
gtggtggcgcgggacggcgggcggccgccgcgcgccgccgcctgccgcctcagcgtgcgg
gtggaggacgccaacgacaacgagccccgcttcgagcggcaggtctaccgcggccgcctg
cccgagcacgccccgcccggccgctgccccctgcaggtcaaggcaacagatgcagatgct
gaccagtttggtgaaattgagtattttctctatgatggattccattattatgaaaaatcc
aaagccttccagattgacccacgtactggtcagatctgtgtgtctcaagacatcgacaga
gaaggagatccaaccacttatgatctcttagtaaaagctacagatgggggtgggctgagt
gcccaagcttttgttcgcatcgagatagaagatattaacgataatcaacctgtttttgaa
caagccgtgtatgtgacaagcatcagcagtcacacacagccaggaacagagatcatcaat
gttgttgccacagacagagattcgggaatatatggcgttgtcacatatgaaatggtcccg
ggagaattttcttcttttttcacagtggatacatccacaggaattatttacctgatctca
gctcttggccacctggcatgttctgcgctcttgctgactgtttctgcgcgggatgggggt
ggccttccctctgctatcaatgcagccatcacagtaaacatccttcagactggttcagcc
cctgccgtatttgagagatcccgctatactttttcagttcctgaagatacacctgaagac
agcccaattggcactgtaaaggccagagagcctccaaattctttagaagtggtttcttac
agaatttcctccggtgatccacatggaagattctctattgaccctcagtttggtatcatc
cgcaccaaaacccaacttgaccatgaaactcagtctgttgtggtgctcaccgttcagtca
cagctgggtgactcccctgtctacagtagcacccaggtcaacatatctgtaatagatatt
aatgacaaccctccagtatttcttacccaatcggatagggtaactatttcacatacccag
cctcctggcactgctgtctacattgctcatgcagaagacaaagacagtggcctaaatgga
gcaatcaaatatagtattgcaagcaaacagtcaaatgcattcagcattgatccaagcctt
ggagtgataaatctcaccaggacagtgtttgcggataagcagcatgcatatactctacaa
atagcagctgaagacagtggaattcctccactgacttcttcgctcatgttgacagtgatt
attgaagagcagaagatgggccctactttggtttttcaaaacttggtgtatcaagtagaa
atcagtgaagctacctctccaggtgcccaaatccttcaggttcaagcccactcacttgat
ccacacagtgttacctccaagctgacgtattccttagagcctagcacagattctgttgca
tttggaatcatctctgatactggctggatttatcttcgtaaacgtttgaactacgaatgt
gcacagatactaagttttagagtcctggtcagcacacctgagcatgaaaacctcaggcaa
aatgcaagtacattggtaatagttaatgtcctggatgaaaatgataattctcccatgttt
atgcgtgagagctacttctttgaactggaggaaaatccaattcctagaggtgtggttggc
accattacagcagttgacaaagactcaggaagaaacggacaactttcctatttcctcttg
tctgatggaaagtatttcaagattaattccaacacaggtgaaatcataaattgggttgca
ctggaccgtgaaaaacaagctcaccaccaactgaccgtgctagtgaccgaccacgggtca
ccgcggcttaacgccacggcagccgtgttcatcgccgtgagggacctgaacgacaacgag
cccctcttcccgcaggcagcccccgggcgggagctgcgcctcaaggttttggaagggcag
ccatcaggaacacttattaccactgtctttgcaaaagactttgattctggaagcaatggt
gttgtgttatattcaatagaaccagaagaggatataggatacttccagattgatgctgtc
agtggggagttaagaacgacccggtctctgtcacatgctgagagaccggactatagaatg
atggtcacagccagggaccagggaatgccttcgcttcaaggacgtgctgctgtttacatc
caggtaatcccacttcccaatgggagatctgtcttctctcaagatttcaaacacttcgtc
atacctgaaaattgtaaacctgcgcaagtgttgaatttcctgaagtggcctgaaaatcat
ctaacaactaacaggaaactgcatttcagcatcgctaaagaagatgatgatgtacatttt
gaaatagatagcttgactggagacctttttctttccaaggaacttgactatgaaacagct
tcgcacttccttttgcaagttatcataaaggattataataataatcctcaacagaataac
actgtcttcctaagtattgatgtagaagatcagaatgatcattctccgtattttcaagat
cactttgtagtgatcggcatagaggaaaatgtacctgttggcactctggtttacacattc
aatgcaaaagatggagatggcggttttctgaacagcaaaatacagtattccctagaaatg
agtaacatgagtaaaaacccatttcttattcacccttcgcatggcaccttgaccacagct
tttccactagacagggagattactcgctctgtggtcctcacagtgtctgcggcagaccag
gcaataaatctcactgatcgcaggcttgattccctggctgcaaaaatcgttattctggat
atcaatgacaacagtcccagttttacgtcttcacctctttcctatgtcatggaggatgtg
gaggtgggcttccttgtgcaccgtataattgcaaaggatcctgatgagggaagaaatgga
caagttacatatcacattctttcaggcaatgaaaacaaagcatttatattggataaaatt
acaggactcttaactacagcccagcttctagaccgtgagattcagaactgctataatttg
acactcatggctctcgatgacggcagcccagctctcttcgccacacaggttctaaccatc
gttgttcttgatgtgaatgatgaagccccaatgtttctgaagcaactttatgagactgcc
attcgtgaaaaccaagatccaggggagtttgtgctaaaggtggaagctgtggacagagat
gcaggactgaattccttgcttcgatatgaaatcttaccaggaactggttacgagaaattc
aagatgaacccggacagtggagtactcctaacaactgcatcactggacagggaaacccag
gaggttttcaggattaaagtcttggttcgagacagtggaaccccatcgctgtcaagcacg
gtgacagttatctgcacagtgctggacgaaaacgatcactctcccatgtttcttcttccc
acctctgagatccatatttcagagaaccaacagccttctgtcgtttacattgcccgggct
gtagatatggatgctggaaataatggagttctaagatacaaaataattggtggaaatgtt
ggcgaatacttcacattaaataacacttcaggaaaactgctggtcactcgtagcttagac
agagaagacatcagcaatttcactcttgtaattgagtgccgtgacctaggcagtccctca
agaagctccactgcacagctgtatctgacggtcttggatgaaaacgaccacaacccgatg
tttgcaaagaccgagtatcaaatctctgtgagagaagacctagaagaaggctcagccatc
ctggacctctttgcttctgacaaagatgatggcctaaatggcgaagttatgtactccctc
attgatgacaccttcggagcatttgctattgacagtgtaacggggtctatagttactaca
aaggcactggaccgggagaccaaatcccagtatacatttagggctgtggcaagtgactgt
agcacccatttgccaagaagcaccactgtcagtgttgtggtgcacgttgacgatgtcaat
gataatgatcctgtttttttgcagaatcctatcagggcctttgtcccttctgaaacccat
gtgaatgagacagtagccactgtgagagcagaggacatggatctgggatcaaacggagct
gttgtttttagactgatgatagcggaaactgtatttcagatcgacgcgaagacaggtgac
atcattctacaggagcccttggcttccaaggacttcagtacccagctgctagtgacggct
tcagatcaaggtatctcacctcgaacagccacagctatggtcattatctttacagaagaa
gaagaggaggagatttcattcagccatagcctgtatgaagcaagcgtgcctgagaacagt
gcagcaggtacatcacttctaactgtagaagcttacgaacacaaatttacaggagaaaac
ataaaatacagcatcttcagtgacaaggaaagcatattctccatacaccccactacaggt
gcaatcacagtaaacaagccaaagtctcttgattatgaagctaagaataaaatacatctt
tcagttttggctgaaaatagcttgaattcagcactctgtggagtgacaattttgattcaa
gatgtgaatgacaatgcacctaaatttgagcaaagctattacaaagcatcagtatgggaa
ggccaaagtcctaaaacagacatcatacagatatttgcaactgaccttgacagtgggctg
aatggagaaactgaatactcagttttatctggtaatgaaaatgcaacatttgtaattgat
tcagcaagagggattttagcaactaatacagtcctagatcacgaaaatgcttcatcttac
aggttggttgtacaagctgctgataaaggaaatcccagactttctgctacaagtattgtg
cggatacaagtgttagatgttaatgacaatgctccagttgtccagccactaggtgaagtg
gaggtcccagaaaatgccctgtctggttttgtagtgactcgggtgtcagcaagtgatgca
gactccaggccagcacttcagtttggttttatttatgataatagtcctggaatgaaattt
gccatcaacgaacacaccggtgtagtaacagtggtggaaccattagattttgaagaaact
gctgtgtataagctgagaatcgtagtttcagattctgtacatcaaacagaagccgaactt
gtcatccgtgttttggacgtcaatgataacccaccagtgtttactcaggattcgtatcag
gtgagattgccagagctcatttctatggatgccattgttctgacagtctctgctgtggat
agggattcggggcataatggaatgatttcctacaaaatcctctcttcctctgagggattt
tccattgatcacaagaatggttcagtgttcactacgggaccagtgacacagctggaaaag
atttccattattcagctcctgatagaagccatggatggtggcagtcccactctgagtgca
gttacctccgtagaggtgcatgtagaagatgtaaataactatgcccctcagttcacaaga
gatctgtacaatctcagcgtgagtgaggatgcctcagttggagaaagtgtcctcacattt
tcaaccatcgaccatgattggacacatgaaaacacgtatgttgaatattctattattgat
ggcaatactgagaatttattctcagtggaaacaagcatcatggagttagaaacatcctac
aaacttgttggcagtcttgttttgagcaatgttctcgacagggaaatggcttcttctcac
cgtttggttctccttgcctctgatcggggaacgccctccttgaattcaactgctactgtg
ctaataactgtgctggatgttaatgataattctccagtatttagcagtccagagtaccat
attcatgtcaaagaaagcatccctgtaggtagtcatgtcactgaagtttcagcaaatgac
tgcgatgcaggcactaacgcagagatcacatatgctatcatctctggaaatgacagggga
cattttcatttggatgagaaaacgggatcagtggatttgatgaaaacgctggattatgag
gataccatgaaattcattttgatcatccaagccacagatggaggaactgatgtaaaaaat
gtggctttttctgttgttcttgttagcgtcctagatgacaacgattatgcccccctgttt
ttgtttcccagcctgagctgcattgtcagtgaaaatctgcctaccttttcttttgtttgt
gctgttaatgcactggattttgataaaggctcctatggacaccttacctactccatccag
tcttcatgtttggctcatcgtgaagctcctagagaccatgacatgttcttcattgatcct
ttgacaggagatattcatacaaagcaaatgtttgactacgaaagtcagaataggtactgt
ttcataatccaagcaaaagacaaaggtgactcactggctgtcattacagttcaggtagat
attgaggggagagatgaatttgacccagtctttacacaacaggagtatttctttaatctc
cctgagaagaatgaagcgggccagttgcttggcagagtgacggcatcagacagtgatggt
ggactggatggagttgttcattactccctgctaaaaagttctccattcttttctgtgaat
caaaccagtggtaatatttatttgactcagactgttcaccggaggacaaatggcagcaaa
aggaatgatgacaccctggaattcttgataagagctcatagccccaaaattgagtcaaag
tccacagtatgcactgttttggtaaatgtttccaattctcctgaaagttatcccataatg
tcagcatacagcctgaccattagcgtttcagtctccttgatagtgttcctactgcttgtg
gtcagtcttactgcacttattctgagacataagcggaaagatctgatgaattcttgtgtg
aaaaaagaaacagtatcctcctcagctactgatgtgaattcagccacggaagataaggac
tgccagaaaatccaaagtactgagagcagtatgcttcccatgggtgccatagcagaatgg
ctgagcctagcaggaatcagagaggggaaggacgatgttgtcatctgcaggcattcagac
tccagtggccacagttctgctgaaggagaaactgcagaggacgaggaaatcaaaaggatc
aatgaacatccttgcagaaagagtgctggctcagcactgagtgagcatggctcacgggtg
ccagattcggggatcccaagagagtctgatcagctctcctgtcagtctggagaaatggat
gtcgtggctaccatgcaaagcatggagagcatgcaggctattaaaggagaaggcagagaa
gaagcctgtgacacagcctatgcacataaaatgttgtctcaagcacttaagaaaattgga
ataaaagagaaagacataatgacagacctcacgagagaatatgtcttgatgtcagatagt
caggattctgggtgtgattcacttgcaactcttggcacctctgatgaagatactggaggt
ggttataactgggattatgtgctcagttgggaacccagatttcagcctcttgcctcagtg
tttaatgatattgcaaaactgaaaaatgaaaacgtacacattcatagcttccctaaggag
aagaaatcttttgtttttcctcctcccttgataacatcagtagctcagcctggcataagg
acagtgcctccacgaatgcccaatgtaacatcagggcaagcatttaaaatccaccctcgt
tctcctcttatccataatcttggataccctccaccaaccatgacccccagtttttctcct
tctctctctctacttaccatacagacacctactgcttctccagtaatgtctgatgggaaa
atgataggaacatgtcttattgatccaagccatgaacttgcaacagaggaagaaattcag
gtctag
DBGET
integrated database retrieval system
