Chroicocephalus ridibundus (black-headed gull): 134516659
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Entry
134516659 CDS
T10910
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03030
DNA replication
crid03410
Base excision repair
crid03420
Nucleotide excision repair
crid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134516659 (RFC1)
03410 Base excision repair
134516659 (RFC1)
03420 Nucleotide excision repair
134516659 (RFC1)
03430 Mismatch repair
134516659 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crid03032
]
134516659 (RFC1)
03400 DNA repair and recombination proteins [BR:
crid03400
]
134516659 (RFC1)
DNA replication proteins [BR:
crid03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
134516659 (RFC1)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
134516659 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
Rad17
AAA_22
BRCT_2
AAA_5
AAA_30
RuvB_N
AAA_18
AAA_16
RNA_helicase
AAA_17
AAA_33
AAA_7
nSTAND3
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
134516659
NCBI-ProteinID:
XP_063193151
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Position
5:complement(67313277..67354759)
Genome browser
AA seq
1152 aa
AA seq
DB search
MLDIRKFFGVVPPGKRQECETVKKSEKITNGQGPSSGKKRGKETKVNNSPSDDDYKQKRT
NKKKRIIYDSDSEEEVQSVKKSKKPSEKKAATSKLGKVLKQDPVVYISETDEEDDFVNKR
ISLKPKENGTSTIGCPGTTTVKKEDVKPRPKSKPLSPVKQTPTSALDYFGTSSVQRSEKK
LVASKRKEPSPSRDSTVDDEAIAKQLQLEEDSELERQLHEDEEFAKTLAMLDETPQKKKA
RKDSGGEQTVLSTKTSPNVVERYKQSERVKATNSTGEAKNYAAKQQTKSERSKGSPSSPQ
SSDGKTARELTDKTLPLRPSSKLVSLKQKEEVAEKGRGAQSLVSKEKIASRKEEKTTPKK
EKISPKKSESVSPEDSEKRRTNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITG
VLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKVIDEDGLF
DLIRTMPGKKSKYELAAETEAKKADSRPKRTPQKAEKRNFSPIKREADNKKYKSTPEKGD
SVKSVKKETTAVRKLMDFKRQTVEKKETPKPKENFISETNEDGTERLLWVDKYKPVSLKA
IIGQQGEQSCANKLLRWLRNWNKSTSEDGQAKTNKTGGKDDGTGFKAALLSGPPGVGKTT
TASLVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMD
EVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQI
KGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDAGRA
KKDIKLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGN
LKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFP
SWLGKFSSTGKHDRIIQELAMHMSLRTQACKRTVNMEYLPCLRDALVQPLKDLGADGVQE
TITFMDSYCLMKEDIENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLHSV
KTPKRQSGSAVTLELNEGLNVEEIQSDEDEEDTVESDAMIKQKKPKSSKLPKREKNEETT
KKEGKRKEKTRH
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgctggatatccggaaattctttggcgttgtacctcctggaaagcgacaagaatgtgag
actgtaaaaaagagtgaaaaaattacaaatggtcaaggaccatcaagtgggaagaaaagg
ggaaaggagactaaggtgaataattcacccagtgacgatgattacaaacaaaagcggaca
aacaagaaaaaaagaataatctacgattcagattcggaagaggaggtgcagtcagtgaaa
aaatccaagaagccatctgagaaaaaagcagctacttcaaaacttggtaaagttctaaag
caggatcctgttgtttatatttcagagacagatgaagaagatgactttgtcaataaaaga
atttccctgaaaccaaaggagaatgggacgtcaactatcggttgtccaggaacaactaca
gtgaaaaaggaagatgtaaaaccacgacctaaaagcaaaccattatctccagtgaaacag
actcccacctcggcacttgattattttgggacaagtagtgtccagcgatcagaaaagaaa
ctggtagcaagtaaaaggaaagaaccttcaccaagcagagacagcacagtagatgatgag
gccattgctaagcaactgcagcttgaagaagattcagagctggagagacagctgcatgaa
gatgaagaatttgctaaaactttggccatgttggatgaaacaccacagaagaaaaaggct
cgtaaagattcaggaggagaacaaacagtattgagcaccaagaccagtcctaatgtggtg
gaaagatataagcagtcggaaagagtgaaagcaacaaattcgacaggtgaagcaaagaat
tacgctgcaaagcagcaaactaaatctgaacgttcaaaagggtctccttcatccccacag
tcatctgatggtaaaacagcaagagagttgacggataagacattgcctttgagacctagc
tctaagcttgtatctctcaaacaaaaagaagaggttgctgaaaagggaagaggtgctcaa
agtttagtatcaaaagaaaaaattgcttcaaggaaagaagagaagacaacaccaaagaag
gagaaaatttcccccaagaagagtgagtctgtaagtcctgaggactctgagaagaggaga
accaattatcaagcctaccgaagcttccttaatcgtgagggtccgaaagcactgggttcc
aaagagatacctcagggagctgaaaactgcttggaaggcctgacattcgtaattacaggc
gttttggagtctattgaaagagatgaggccaagtctctgattgaacgttacggaggaaaa
gtaactggcaatgtcagcaagaagacaaactatctggttatggggagagactgtggccaa
tctaaatgtgaaaaggcgtcgactttagggacgaaagttatcgatgaggatggcctgttt
gatcttattcgaactatgccaggcaaaaagtccaaatatgagctggcggctgaaacagag
gcaaagaaagcggattcaaggcctaaaaggacaccacagaaagctgaaaaaaggaatttt
agccccatcaaaagggaagctgataataaaaaatataagtctactcctgaaaaaggagat
tctgtcaaatctgttaagaaagaaaccactgctgttcgaaagcttatggactttaaacgg
caaactgtagagaagaaagaaaccccaaaacctaaggagaacttcatttctgagactaac
gaagatggaacggagagattgctatgggtagataaatacaagcctgtatctcttaaggca
ataattggacagcagggtgagcaaagctgtgccaataaactgctccgatggctccgaaac
tggaacaagagtacctcggaagatggacaagcaaagaccaataaaactggaggcaaagat
gatggtactggttttaaagcagcattactttctggtccacctggagttggtaaaactact
acagcttctttggtttgtaaggaactggggtatagctatgtggagctgaatgccagtgac
actcgcagtaagaacagtctaaaggaagtagttgctgaatcgcttaacaacaccagcatc
aaagacttctgttctggcacatcctcatcagttagcgggaaacatgtattgatcatggat
gaagtggatggtatggcaggcaatgaagacagaggagggattcaggagttgattggtttg
attagacacacaaagatacccatcatctgtatgtgtaatgaccgcaaccatcctaaaatt
cgttccttggtccactactgttttgatcttcgttttcagagacctcgtctagaacagatc
aagggtgccatgatgtctattgcatttaaagaaggtttaaaaattccaccacctgctatg
caagagataatcctggcagcaaatcaggacatcagacaggttttacataaccttaatatg
tggtgtgcaaaagataaatcattgacctatgatgaggctaaaacggatgccggcagagcc
aaaaaggatatcaaactgggcccttttgatgttgtccggaaggtttttgcaacaggagag
gaggcttctcgtatgtctcttatagacaaatcggatctgttcttccatgattattccctg
gcacctctctttgttcaagagaactatgtacatgtgaaaccagccgctgctggaggaaat
ctgaagaagcacttggtgcttttgagtagagcagctgatagtatatgtgatggtgatata
gtggacaagcagattcgtagcaagcaaaactggaatcttcttccaacacaggctatttat
gcaagcgttctcccgggggagctgatgagaggttacatgtcccagtttcctgtctttccc
agctggctggggaaattttcatccacgggcaaacatgatcgtatcattcaagaactggca
atgcacatgagtctcagaacccaggcgtgcaagaggacagtaaacatggagtatttgccc
tgtttgcgggatgcgcttgtccagcccttgaaagaccttggagcagatggcgtacaagaa
actataacgttcatggactcttactgcttgatgaaagaagatattgaaaacatcatggaa
ataagcacatggggaggcaaacccagtcctttttcaaagctggatcccaaggtcaaagca
gcttttacacgtgcctacaacaaagaggcacatctcactccatattcacttcattcagtc
aagacacctaaaaggcagtcgggatctgcggtgaccttagaactgaacgaaggcttgaat
gtggaagagatccagtctgatgaggatgaggaagatactgttgaaagtgatgcaatgatt
aagcaaaaaaagccgaagtcttccaagttgccaaaaagagagaaaaatgaagaaacaaca
aaaaaagaagggaaaagaaaagagaagacaagacattaa
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