Chroicocephalus ridibundus (black-headed gull): 134516748
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Entry
134516748 CDS
T10910
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134516748 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crid03021
]
134516748 (POLR1A)
Enzymes [BR:
crid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134516748 (POLR1A)
Transcription machinery [BR:
crid03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
134516748 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
134516748
NCBI-ProteinID:
XP_063193363
LinkDB
All DBs
Position
5:48728425..48763523
Genome browser
AA seq
1706 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKAITNPQYLDNMGNPASNGLYDLSLGPPDS
KEACATCMQNFRNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCARAVVHLL
LSQLKVLEKGLLHAVHDLEVILNRFLEQCADATGSEIEEELNRHVQEILQNSQIRDQCSN
VKNVCECRNKLITQFWKAHMSSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYRKSGEEGI
LDEPAGIEESQLGKRGYLTPMTAKEYVLALWKNEGFFLRYLFPGMDPHDSSGFSPDMFFL
DLLVVPPSRYRPVNRLGDRLFTNGQTVNLQAVMKDVKLIRKLLVFMAKEQCQPIKIAEEI
QTETGENNEPLDHSVLTMITGQTIADKLYNAWIRLQSHVNIVFDSDMDKLTTEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKILPPAIMKPQRLWTGKQVVSTLLINIIPEKQLPLNLTGKAKIGGRAWVKGP
ANRCLNLDSMCESQVIIRNGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKPEADHRRKKIIEKSSQHGIEAVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNSYNNEINKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPKQFPFIADNYEVIQKANHLDEALARMESHQANEQFKAIKKWRARHQNS
VQREGGFLMFSQKKMASVKAQIPGGEIKNGRDPATLQLLKMWYELDEKKRRKYLKKTNKC
PDPSLGVWRPDTYFASVSETFENGVEDYINRWQSENSQSYMHPALSSDRLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTP
TMSVPVFNTKKALKKVKQLKKRLTRVCLAEVLQKVDIEESLRVECKQNKHRLYKIKFHFL
PHEYYREEKCVKPREILHFMERRFFKILLEAIKRKNAKMASFTEVSTRKATRKDLDGDQD
KTQNNPSAEEEENIVDAEADEGDGDATEAKRKKNQEEEVDYESEEEDGEENIDENLEDED
AESEKEERTPGAEEDQNEADGGDSQHLSFMSQTKKEKDRLLQSAQLRVNAVLESHPSIQD
YTFDTENELWCEVSLALPLMKVYFDISSLLVSLARSTVIHEVKGITRCLLNESTNRQGEK
ELVLNTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVIIKEIKDVFAVYGI
VVDPRHLSLVADYMCFEGFYKPLNRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDELR
SPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgccgaaagtggtgccgtggcggcggctggttggtgtctccttcgggatgtac
acggccgaggagattaggaaactgagtgtaaaagccataacaaatcctcagtatttggat
aatatggggaatccagccagtaatggactgtatgacttgtctttgggacctccagactcc
aaggaagcgtgtgcaacttgcatgcagaacttcaggaactgccctggtcattttggccat
atagaactgcctctgactgtctacaaccctctgttttttgataaattataccttctaatt
cgaggttcgtgtttaaattgtcacatgctgacgtgtgctcgagctgtggttcacttactg
ctaagtcagctgaaggttctggagaaggggttgcttcatgccgttcatgatcttgaagtc
attctgaacaggtttttagagcaatgtgcagatgcaacaggttcagaaatcgaagaagag
ttaaatcgccacgttcaggaaatattacaaaattctcaaataagggatcagtgttcgaat
gtaaaaaacgtgtgcgagtgtagaaataaactgataacacagttctggaaagcacatatg
agttcaaagaaatgcccaaactgcaaatctaggagatcactagtgcgaaaagagcataac
agcaaactgacagtaacctatccttctacagtgtaccgtaagtctggagaggaaggcatt
ctggatgaaccagcaggtattgaggaaagccagttaggtaagagagggtacctgacaccg
atgactgccaaggaatacgtcctggctctgtggaagaatgaaggtttctttttgcgttat
ctcttccctgggatggatccccatgacagttcaggattcagtccagacatgtttttttta
gatctacttgtggttcctccttcaaggtatcgtcctgtgaatcgtcttggagaccgactg
tttacaaatggtcagactgtgaacttgcaggctgtcatgaaagatgtgaaactgatacgg
aagctcttggttttcatggcaaaagagcaatgtcagccaataaaaattgcagaagaaata
caaacggagacaggagagaataatgaacctctcgaccattctgtcctgacaatgataaca
ggacagaccattgcagataagctgtacaatgcttggattcgtcttcagagccatgtcaac
attgtatttgatagtgatatggacaaactaacaacagaaaaataccctggtattcgtcag
ctattagagaagaaggaaggactgttccgcaagcacatgatgggaaagcgtgtggatttc
gctgctcgatcagtcatttgccccgatatgtacattggtaccaatgagattggcattcct
atggtatttgctaccaaactgacttaccctcagccagtcactccctggaatgtcaaagag
ctgaggcaggctgtcataaatggcccgaaagttcaccctggggcctccatggtcattaat
gaagatggatctcgtacagtgttgagtgcaagcagcctgacccagagggaagccatagcc
aagcaactcctcactccttcttcaggagcaccccagtcaggactgaagattgtatgtcga
catattaaaaatggagatgtccttttactgaaccgccagcccactcttcatagaccctcc
atccaagctcaccgggcccgaatcctgcctggagaaaaagtgctgaggcttcactatgcc
aactgcaaggcttacaatgctgattttgatggcgatgaaatgaacgcccattttccacag
agtgagctgggtagagcagaagcctacaccttagcttttactgatgaacagtatctggtt
ccaaaggatgggaagccacttcctggcttaatccaggatcacatgatttctggagtcagc
atgacaatccggggctgctttttcaccagagagcaatatatggagcttgtttaccgagga
ctaacagacaaaaaaggaagaattaaaatccttccccctgccattatgaaaccacagaga
ttatggacaggaaagcaggttgtttctacattgttaataaacatcattccagaaaaacag
ctcccactgaatttgactgggaaagctaagattggtggaagagcctgggtaaagggacct
gcaaacagatgtctaaatcttgattcaatgtgtgaatctcaggttattattagaaatggg
gaattactgtgtggagtcttggacaaagctcactttggcagctctgcctatggccttgtc
cactgttgctatgaaatctatgggggtgaaaccagtgggaaagtgctaacatgtctagga
cgcctctttactgcttatctgcagctgtacaggggatttacaatggggattgaagatatt
ttggttaaacctgaagcagaccacagaagaaaaaaaatcattgaaaagtcaagccagcat
ggtattgaagctgttagagctgctcttaatttgccagaaacagcatcatgtgaggaggtc
caaggaaaatggcaggatgcccatctctgcaaagaccagagggattttaacatggttgat
atgaaattcaaagaggaagtaaacagttacaacaatgaaattaacaaggtttgtatgccc
cttggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcaggagcc
aaaggatccactgtaaatacaatgcagatttcttgtttgctgggccagattgagttggaa
ggtcgaagacctccgctgatggcatctggcaagtcactgccatgtttccagccttatgat
ttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcaaaccttct
gaattcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtgaaaacc
agccgttctggatacctgcaaaggtgtatcataaaacatttggaaggactggtagttcag
tatgacctgactgtacgagatagtgatggcagtgtggtgcagtttctgtatggagaagat
gggcttgatatccctaaaactcagttcttgcaacccaagcagttccctttcattgcagat
aactatgaggtaatccagaaggcaaaccatctggatgaagctttagcaaggatggagtct
caccaagctaacgagcagttcaaagccatcaagaagtggcgagccaggcaccaaaactcg
gtgcaaagagaagggggttttctgatgttttcacaaaagaaaatggcaagtgtaaaagca
cagattccaggaggagaaatcaaaaatggaagagatcctgctactttacagttactgaag
atgtggtatgaactagatgagaagaaacgaagaaagtatctgaagaagacaaataagtgt
cctgacccaagcctcggtgtttggcgtccagatacttattttgcatctgtttcagaaaca
tttgaaaatggagtcgaagattatatcaacagatggcaatctgagaacagtcaaagttat
atgcacccagcactttcttctgatagattaaaggatttgttgtatttaaagtggcagcga
tctctttgtgacccaggagaagctgtaggtcttcttgcagctcagagtattggggaacct
tccacacagatgactctgaacaccttccactttgctggcagaggtgaaatgaatgtcacg
ttgggtattccaaggttgcgggaaatattgatggtggccagtgcaaatattaaaacacca
acaatgagtgttcctgtgtttaataccaagaaagctctcaagaaggtgaaacagcttaag
aaaaggctcacaagagtgtgcttagctgaggtcttacagaaagttgacatagaggaatcc
ctgcgtgtggagtgcaagcagaacaaacatcgcctctacaaaatcaaattccatttcttg
cctcatgaatattaccgagaggaaaagtgtgtgaagcccagggagatcttgcacttcatg
gaaagaaggttcttcaaaattttgctggaagcaattaaaaggaagaatgcaaagatggca
tcttttactgaagtcagcacccggaaggcaactcggaaagatttagatggtgatcaagac
aagacacagaataatccttcagcagaggaagaagagaacattgttgacgcggaagctgat
gaaggggatggtgatgctacagaagcaaaacggaagaagaaccaggaagaagaggttgat
tatgaaagcgaagaagaggatggggaagaaaacattgatgaaaatctagaagatgaagat
gctgaatcagaaaaagaagaaaggactcctggtgctgaagaagatcagaatgaagcagat
ggtggtgattctcaacatctttcctttatgtctcagactaaaaaagagaaagatcgatta
cttcagtcagcacagttgcgagtgaatgctgttctagagagccacccgtcaatacaggat
tacacatttgacactgaaaatgaactttggtgtgaggtttcattggcgcttccgttgatg
aaggtttacttcgatatctcctccttgcttgtctctctcgcacgaagcacagtcattcat
gaagtgaaggggatcacacgatgcttgttgaatgaaagtaccaataggcaaggagagaag
gaacttgttctgaacaccgaagggataaaccttgcagagctgttcagatactctgatatt
ttggacctgaacagactttattccaatgatattcatgccatggctaagaattatggaatt
gagtctgccctgagggtgataataaaggaaataaaagatgtatttgctgtatatggcatt
gtggtagaccctcgtcacctttcacttgtggcagattacatgtgttttgaaggattttat
aaaccgctgaatcgttttggaattcagtccaactcctctcctctgcaacagatgacgttt
gaaaccagctacaaattcttgaaggaggcaacaatgatgggcgcccatgatgaactgcga
tccccttctgcgtgcctagtggttggaaaagttgtgaaaggagggactggtttgtttgac
ctcaagcaaccccttacatag
DBGET
integrated database retrieval system
