Chroicocephalus ridibundus (black-headed gull): 134516854
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Entry
134516854 CDS
T10910
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134516854 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134516854 (EXOSC1)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
134516854 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
134516854 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
134516854
NCBI-ProteinID:
XP_063193620
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All DBs
Position
6:complement(16210316..16212790)
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AA seq
195 aa
AA seq
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MAPPARYCVPGERLCSAEEATAGSGTYTRHGFIFSSLAGCLEKRSEDSGLPVVSVVRDAE
SQLLPDVGAVVTCKVCSINSRFAKVHILYVGSTPLKSTFRGTIRREDIRATEKDKVEVYK
SFRPGDIVLAKVISLGDAQSNYLLSTAENELGVVVARSEAGVQMVPISWCEMQCPRTHTK
DFRKVARVQPQFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctcccgctcggtactgcgtccccggcgagcggctgtgcagcgcggaggaggcc
acggctggcagcgggacgtacacccggcacggcttcatcttctcctcgctggccggctgc
ctggagaagaggagcgaggacagcgggctgcccgtcgtgtcggtggtgagagatgccgag
tcccagctcctgcccgacgtgggggctgtggtgacatgcaaggtttgcagcattaattcc
cgctttgccaaagtgcacatcctgtacgtcggctccacgccactgaagtccaccttccga
gggaccatacggagagaagatattcgagccacagagaaagataaggtagaagtgtacaag
agtttccgccccggtgacatagtcctggccaaagtcatctcgctgggggatgcacagtcc
aactacctgctgagcacggcggagaacgagctgggggtggtggtggcacgcagcgaggca
ggagtgcagatggtgcccatcagctggtgtgagatgcagtgcccgcggacgcacaccaag
gacttccgaaaggtggcccgcgtgcagccccagttcctgcagacctag
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