KEGG   Chroicocephalus ridibundus (black-headed gull): 134516909
Entry
134516909         CDS       T10910                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04382  Cornified envelope formation
crid04510  Focal adhesion
crid04512  ECM-receptor interaction
crid04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:crid00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134516909 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134516909 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134516909 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    134516909 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:crid04147]
    134516909 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:crid00536]
    134516909 (COL4A1)
Exosome [BR:crid04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   134516909 (COL4A1)
Glycosaminoglycan binding proteins [BR:crid00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   134516909 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 134516909
NCBI-ProteinID: XP_063193795
LinkDB
Position
1:complement(66621158..66752354)
AA seq 1669 aa
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPPGTQ
GFQGPMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPSPHMK
EKGSEIIRGEKGEPGEKGEQGAPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEPGL
PGGFGIPGRPGEPGTKGDKGERGFPGPPGRVIDPGPVDTFGEKGEPGASGLPGLKGQKGE
KGFPGIQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFPLPGPPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGTPGLPGRDGFPGEMGEKGDKGESCALCDKVGPPGLPG
PQGPPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFTYDSILK
GEKGDPGFPGQPGIPGREGRPGKDGLPGPQGPKGTAGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGVGAAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFPGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGSQGPPGAPGLGPPGSPGPAGQPGPQGPPGFPGIKGERGFPGLPGLDMPG
PKGEKGIQGQPGVPGSVGLPGLPGPQGAVGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGLKGVVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGEYGEPGIPGKDGEPGTPGQPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGIPGRGLPGFPGAKGDKGAKGDVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGAPG
LKGAKGEQGSNGWPGTPGLPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKG
SPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgcggctctggctaggcttcgggctgctgctgagcgccgagctcagcgccgtctctgcc
gcgggttgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagcatcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacgaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactgggagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctagtttg
ctaaaaggtgacaaaggctttcctggccaacctggactacctggtccacctggaactcaa
ggttttcagggaccaatggggccacaagggcctccaggagaaccaggtcccccagggcca
ccaggactcccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggcgtaaggggccccccaggccctccaggaccatcaccgcatatgaag
gaaaaagggagtgaaatcataaggggagaaaagggtgaaccaggtgaaaagggtgaacag
ggggccccaggattgccaggttcaggtttcaaaggagaaaagggtgaaccagggaagccc
ggtccacgtggaaagcctggaaaagatggtgaaccaggaccaaaaggagaacccggtttg
cctggtggatttgggattccaggacgacccggggagcctggtacgaagggtgacaaaggt
gaacgaggttttccaggacctccgggaagagttatagatcctggaccagtagataccttt
ggtgaaaaaggagagcctggagcttccggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggtttccctggtatacaaggaatcccaggacctccaggtcgaccacttccagatagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccggga
ttccctttacctggacccccaggaagagatggtttcccaggtcccccggggttgcctggc
cctccaggtcctccaggcaaaacagatggaattgatcaatgccagcagggagaacctggt
gcaccaggtactcctggacttccaggaagagatggatttcccggagagatgggagagaaa
ggtgacaaaggtgaatcctgtgccttatgtgataaagtaggacctcctggacttccagga
ccacaagggccaccaggtccagcaggttttccaggacaatcgggtttcaagggtgacaga
ggcttacctggactcgatggccttccgggggtacctggccctcccggcactccaggactt
atgggcagccccggggcaaaaggagaaccaggagattttacttatgattctatcctgaaa
ggggaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaaga
ccaggaaaagatggattgccaggtccccaaggtcctaaaggaacagcgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggggaaaga
ggttttcctggccctcctggggtaggtgctgcagggttacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggagcaaaaggtgaagcaggacga
actgtaccactccctggacctcctggggcagatggccttcctgggccacctgggttccct
ggaccccaaggtgacaaagggaatcccgggcttccaggtagacctggcctgccaggagaa
aagggtgctgttgggcagccaggtatagggttccctggacctccaggacccaaaggtttc
ccaggtcagcctggctcacctggtctgccggggactccaggaacccctggcctggatggt
ttgccaggtgtaccaggtttacaaggtcaaaaaggtgaacctggtgtaggtctccctggc
cctaagggcttgccaggccctccaggcccagctggcatccctggagaaaagggaaatcca
ggattgcctggtttacgcggcgagcaaggctttccgggcatacctggacagcaaggattc
agaggcgaccccggcctcccaggactgcaaggctcgcagggccctccgggcgcaccgggg
ctgggtccgccgggatcgccaggacctgctgggcagccaggacctcagggaccaccagga
tttcctggaataaaaggagaaaggggcttccctggtctcccaggtctagatatgccagga
ccaaaaggggaaaaaggtatccagggccagcccggagtaccagggtctgtggggttaccc
ggcctgccaggtcctcagggggccgttggactgaaaggatcagcaggagccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagccaaggtctcaaaggtgtagttggaccacagggtgatcct
ggtgtcaaaggagataaaggtgaagctggtctcccaggaaagcctggaacgatggacaac
atggacatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaaggcttacgtggggaatatggagaaccaggaattccagggaaagat
ggtgaacctggtactccaggacagccaggaccaaaaggtgatcagggtcccccagggtac
ccaggggatccaggaattccaggacaaaaaggatcggttggtgaaatgggtttgccagga
acacctggagaaaagggtctgccgggagtaccaggttcaccaggtacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
gggtctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcagggattcctggaatgccgggtgcccctggtcccaaagga
tcccctggcatggcaggattcccaggcaaccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggcattccaggcttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggctccattggacagaagggtgaaccgggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtattccaggtagaggacttccaggatttcctggt
gcaaagggagataaaggtgcaaaaggtgatgtgggatttccaggatccccaggaagtccg
gggatcccaggtctgaaaggagaaccaggatatgctggtccaccaggccctaagggtagc
caaggtcttcctggactaccaggaagtgcaattgagggccctaaaggagacagaggaccc
caaggccaacctggccttccaggattaccaggtccaacagggccaccaggagccccaggt
ctgaaaggggccaaaggagagcaggggagcaatggctggcctgggactcctgggcttccg
ggagtcaaaggtgatccaggtttccagggactgccaggtagtcctggtttaccaggagat
attggtcaaaagggtgatctgggacctccaggtgttccaggtgttccaggtccaaaagga
tctcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggtccaccaggcccaccaggtgcttttcaacttgttaaaggggatcctggc
ttacctggccctgtaggaccagttggtctcaaaggattcccaggacttccaggtcccaaa
ggacagcaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtaaacccgggcaaaaaggagaagttggtccgtatggtcccccagggcccagagga
ttccctggtccacctggccccgaaggtttgcctggggctatgggcccaccaggtgcacca
tctgttgctcatggcttccttgttaccagacacagtcaaaccactgaagaaccatcatgt
ccatttggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacggcaggaagctgtcttcgtaaattcagtacaatg
cctttcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactattcc
tactggctgtccactcctgaacccatgccaatgaatatggctcctattactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcagataccaccatgtcctgagggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgcagagggctctggccaggccctggcgtct
cctggttcctgcctagaagagtttcgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattacgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccgactccctcaactttgaaagcaggggatctgcgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa

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