Chroicocephalus ridibundus (black-headed gull): 134517023
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Entry
134517023 CDS
T10910
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04136
Autophagy - other
crid04140
Autophagy - animal
crid04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134517023 (ATG16L1)
04136 Autophagy - other
134517023 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
134517023 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crid04131
]
134517023 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
crid03029
]
134517023 (ATG16L1)
Membrane trafficking [BR:
crid04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
134517023 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
134517023 (ATG16L1)
Mitochondrial biogenesis [BR:
crid03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
134517023 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
eIF2A
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_WDR19_1st
Ge1_WD40
INO80F
WD40_like
Lipoprotein_6
PALB2_WD40
V_ATPase_I
HEF_HK
FUSC
WH_CYT4
HTH_6
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
134517023
NCBI-ProteinID:
XP_063194111
LinkDB
All DBs
Position
6:61679740..61702717
Genome browser
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAAELRRRDRLQRQAFEEIIEQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDMAEETSPVRAVSRTSSKRLSQPAGGLLDSITNIFGLSESPLLGHQSSDAA
RRRSLSSFPAPQDNVEPHPGASKEVRVPTTAVCVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELLGRITALDLNSERTELLTCSRDDLLKIIDLRVSAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAV
AWSPAGAHVVSVDKGNKAVLWSEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccggtttccccccgtggaagcggcacatcgcggcggag
ctgcggcggcgggaccggctgcagcggcaggccttcgaggagatcatcgagcagtataac
aagctactagagaagtcggaccttcatgcggtgctggctgataaacttcaagcagaaaaa
tatgacatgcaaagcagacatgagatcagtccaggacacgatggcacatggaatgatgct
cagttgcaggagctggcacagctgaagataaagcatcaagaagagttgacagagctacat
aagaaacgtggcgagttggcccagtctgtaattgatctgaataaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagcaaagattgcagagtatttgcaaaagatctctgaa
ctggaaacagagtgccaggagttgcgtagcaaactgcaagatcttgagcgagctaatcag
acactgaaagatgaatatgatgctctgcagatcaccttcaatgctttggaggagaaacta
aggaaaacgactgaggacaaccaggagctagtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgacaagccaggctg
cagaaggagctagcagaagctgccaaagaacccctgcctgttgaacccagggatgatgac
attgaagtgcttgcagatgaaacctctgacatggctgaggagacatctccagtgcgagct
gtcagccgaacatccagtaagcgactctcccagccagctggaggccttctggactctatc
actaatatctttggtctgtctgagtctccccttttgggacatcaatcttctgatgctgcc
aggaggcgttctttgtcctcattccctgctccccaggataacgtagagccacatccaggt
gccagtaaagaagtgagagtgcccactactgccgtatgcgtctttgatgcacatgatggg
gaggtgaatgcagtgcagttcagccctggctcccggttactagcaacaggaggcatggac
cggagggttaagctttgggaagtcttgggagataggtgtgagcccaaagggtccctctct
ggtagtaatgctgggattacaagcatagaatttgatagtgctggttcttacctcttagca
gcttccaatgactttgccagcagaatctggacagtggatgacaatcgattacggcacacc
ctgacaggtcacagtggtaaagttctgtcagccaagttcttgctggacaatgcacgcatt
gtttcgggaagtcatgaccggaccctcaagctctgggacctccgcagcaaagtctgtata
aaaacagtgtttgcaggatctagctgcaatgacatcgtgtgtactgagcaatgtgtaatg
agtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagtaaaa
gaactggagctgcttggaagaatcacagctctggatctgaactcagagcgaacagagctt
ttaacctgttcccgtgatgatctactgaagatcattgatctgcgggttagtgctgtcaag
cagactttcagcgcccagggattcaaatgtggctctgactggacgagagttgtgttcagc
cctgacggtaactatgtggctgctggttcagctgatggggccctctacatctggaatgtg
ctcactgggaaattggagaggacgcttgcgaagcatcacagttcttctatcaatgcagtc
gcgtggtcaccagcgggtgcccatgtggtcagtgtggacaaaggaaacaaggctgtcctg
tggtctgaattttga
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