Chroicocephalus ridibundus (black-headed gull): 134517095
Help
Entry
134517095 CDS
T10910
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134517095 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crid04131
]
134517095 (VPS8)
Membrane trafficking [BR:
crid04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
134517095 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
TPR_Vps41
zf_RING_Vps8_fungal
zf-RING_11
Beta-prop_WDR5
Beta-prop_WDR3_1st
zf-RING_2
WDR55
Beta-prop_HPS5
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
134517095
NCBI-ProteinID:
XP_063194306
LinkDB
All DBs
Position
6:complement(60886323..60968212)
Genome browser
AA seq
1397 aa
AA seq
DB search
MEAVPEPGGCPAGAEAEPCPEPPAHRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLE
SILNETDDEEESFILEDPFLLNVDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDTLSLH
GSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLG
STAVGAQYGAVSALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIK
FTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRDHP
ITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAF
CRGDVVHFLLVKRDDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQT
QEELETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQVFYLGTKS
VHVMTLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLSGDTSKRKAVIADRMVE
ILLHYADRTLKKCPDQGKIQVMEQHFQDVVPVIVDYSLLLQRTDLLFNQIYDKMSENSVA
KGVFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVL
LCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISC
CLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEGSVDEEVYPYVRTLLHFDTREFLNV
LALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFV
NRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEETRLIQMAEKAEFYQICEF
MYERQLRYDKIIGCYLRDPVRKEEVFNYIHNILSMPGYSAEEKQSVWQKALEHIEELLLL
SPCKAADLVAIHFSEQIESIITNLQDQFLLFQFLRSLLDPREGINQDLIHLPPCVTEQFI
ELLCQYSPDQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERL
QSKLLTLTQEDESSAELPLLESIEDTLMKTIALCQRNSHNLDQQQREALWFPLLEAMMSP
QKLSGSSQCRYSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGM
LDTFNYEQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCVCLQQYKRRQETADE
IIVFSCGHLYHSLCLLSKECGTVTKGLMRWMCYKCNSSNKGGKLSENFSELKKGSGASLA
QTSSETLLDPQQIQAFDQLCRLNRGTSRLALLTELSRSHGGEKHGLLSVSQGDPATSSVF
QNENFQLHLAPPPLAED
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtcccggagccgggcggctgcccggcgggagcggaggccgagccctgcccg
gagccgcccgctcaccggctgagcgtggcggagctcgaccgcgagctggactcccgcagc
gagctgatcgatgacaaagaattcgacattcctcaagttgatacccctccaacactggag
agcatcttaaatgagactgatgatgaagaggagtctttcattttggaagatccctttctc
ttgaacgttgataatacagatacgcactcctatgacacatcttctgtagcaagctctgac
agcggggaccggacacacctcaaaaggaagaaaaaactcccagatactctctcactccat
ggatcagttatacggctctcgcttctgaaagggatttctgcccaaatagtgtctgccgca
gacaaagtggatgctggcttgcccactgcaattgcagcatcaaatctgatagcagtgggg
acttcccatgggttagcactgatatttgatcaaaaccaggctcttcggctttgtctgggc
agcactgctgttggggcccaatatggggctgtctctgctctcagcatcaacaacgactgt
tcaaggctcctgtgtggctttgcgaaaggacagatcacgatgtgggatctggccagtggg
aagctgctacgatcaataacagatgcccacccaccaggaacagccattttgcacatcaag
tttacagatgacccgacgcttgcaatttgcaatgacagcggaggctccgtatttgaactg
tcatttaagagggttatgggagtgagaacctgtgagtctcgatgtctcttcagtggctca
aaaggggaagtttgctgtattgaaccgttacacgcaaaagttgagctgagagaccatcct
atcacccagtattccctgctggccatggcctccctaacaaagatactggttattggcctg
aagccatctctgaaagtgtggatgacttttccctatggtcgtatggacccttctagtgtc
cctcttctggcgtggcactttgtggctgtacagaactctgtgaaccccatgcttgcattt
tgtcgaggagacgttgttcattttcttctggtaaagagagatgatactggtgcaatacat
gtcactaagcagaggcagcttcatctacactatgacctcatcaactttacttggataaac
tcacggacagcagtgcttctggacagtgtggagaagctgcatgttatagatcgtcagacg
caggaggagctggagaccatagagatctcggaagttcagctagtctacaacagcagccac
ttcaaatcgctggctacgggaggcaacgtcagcgaagccctggcattggttggagagaaa
gcttgttatcagtccatcagcagctgtggcggtcaggtcttttaccttggaacgaagtct
gttcacgtcatgacattgagaagctggagagagagagttgatcacctgctgaaacaagag
cgtctcactgatgccctggctctagcttggtctttttatgaaggtaaagcaaaggctgta
gtaggcttgtctggggacacgagcaagcggaaagcagtcattgcagaccgaatggttgaa
atccttctccattacgccgatcggactttgaagaaatgtcctgaccaaggaaaaatccag
gttatggaacaacattttcaggacgtggtgcctgtcatagttgattacagtctcttactc
cagcgcacggatctattatttaaccagatatatgataagatgagtgagaattctgtagct
aaaggcgtctttctggagtgcttggagccatatatcttaagtgataagctgatgggaatc
acagctcaagtgatgaaagacttgctgcttcacttccaagacaagaacaggttggagaac
ttggaagcctgcattgtgcatatggatatcaccagcttagacatacagcaggtagttctt
ctatgctgggaaaaccatctctatgatgccatgatctacgtctacaacagtgggatgaat
gacttcattagtcctatggagaagctgttcaaagtcattgctcctccactgaacgctggg
aagtctctcacagatgagcaggtggtaatgggcaacaagctgcttgtatatataagctgc
tgcttggcaggccgggcatatccattgggcgatattcctgaagatctggtacctttggtt
aaaaatcaggtctttgaatttctcatccggctgcattcaactgagggatccgtggacgaa
gaggtctacccttatgttcgtaccttgctgcacttcgatactcgggaattccttaatgtt
cttgctctgacttttgaagactttaagaatgacaagcaagctgtggaatatcaacagaga
attgtggacatacttctgaaagtcatggtagagaattctgacttcaccccatcgcaggtt
ggctgtctctttaccttccttgcccgtcagctcgccaagcccaacaacacgttgtttgtg
aacaggacgctttttgatcaggtccttgagtttctgtgcagtccggatgatgactcccgc
cattcggagaggcagcaggtccttttagaattgctccaggcaggagggatagtacagttt
gaagagacccgtcttatccaaatggcagaaaaagcagaattctatcagatttgcgagttc
atgtatgaacgacagcttcgctatgacaaaataattggctgttacctgcgtgatccagtg
agaaaagaagaagttttcaactatattcacaacatcctgtccatgcctggctacagcgct
gaagaaaagcagtcggtgtggcagaaagctttggaacatatagaggagttgctgttgctg
agcccgtgtaaagcagccgacttggtagccattcactttagtgagcagattgagagcatc
atcacgaacctccaggaccagtttttactcttccagtttctgaggagtctccttgatccg
agagaaggcattaaccaagacctgatccacttaccaccctgcgtcacggagcagttcatt
gagctgctgtgtcagtacagcccagaccaggttttggagacgcttaaagttctggaatac
tgcagactggaagaaaccatccagataacccagaaacatcagctccatgaagcttcttca
tatttactggagaagaagggagatatccacggtgcctttttggttatgcttgagcgattg
cagagcaagttgctgacgcttacacaagaggatgaaagctcagctgaactccccttgcta
gaaagcattgaagataccttaatgaaaacaattgccctttgccagagaaattcacacaat
ttagaccagcaacagcgagaggccctgtggtttcccctgctggaggctatgatgtcccca
cagaaattatctggttcttcacagtgtcgatactctgaatctttgaagagtttgacgatg
caagtgctgaacaacatggctgcatttattgctcttccttcaatcctgcagagaattcta
caggatccagtttatggaaaagggaaacttggagaaattcaaggtctcgtcctgggaatg
ctggacacttttaactatgaacaaacccttttagagacaactacgagtcttttaaaccat
gatctccactggtccctgtgtaacctaagagcttctgtcactagagggcttaccccaaag
caggattactgctgcgtttgtctacagcagtacaaaagaaggcaagaaactgctgatgaa
atcattgttttcagctgtggccacttgtaccattcgctgtgtctgctgagtaaagagtgt
gggacggtaaccaaaggcctgatgaggtggatgtgctacaaatgcaactcaagtaacaaa
ggaggaaaactgagcgagaacttctcagagctaaaaaaaggaagtggagcatccttggca
cagacaagttcagagactctgttggatcctcagcaaatccaagcttttgaccaactctgc
cgactgaaccgaggaacgtccagactagctctcctgacagagctgtctcgtagccatggc
ggtgaaaagcacgggctgctcagcgtttcccaaggtgacccggccaccagcagcgtcttc
cagaatgagaacttccagctccatctggccccccctccgctggctgaagactag
DBGET
integrated database retrieval system
