Chroicocephalus ridibundus (black-headed gull): 134517125
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Entry
134517125 CDS
T10910
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134517125 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crid03021
]
134517125 (TAF5)
03036 Chromosome and associated proteins [BR:
crid03036
]
134517125 (TAF5)
Transcription machinery [BR:
crid03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134517125 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
134517125 (TAF5)
Chromosome and associated proteins [BR:
crid03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
134517125 (TAF5)
STAGA complex
134517125 (TAF5)
TFTC complex
134517125 (TAF5)
SAGA complex
134517125 (TAF5)
SLIK complex
134517125 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_SPT8
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
RAB3GAP2_N
eIF2A
VPS8_N
VID27
Motif
Other DBs
NCBI-GeneID:
134517125
NCBI-ProteinID:
XP_063194397
LinkDB
All DBs
Position
6:complement(14517463..14529067)
Genome browser
AA seq
786 aa
AA seq
DB search
MAALPEEPAEVVVVKPDPEAGTSPQQPPAAPPAAAPAAPPAAAAEGEAAGSGAEAAPTKP
AAPGPAASPSALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDVGAAALSPTGTGLL
GTAGGDADSAGENALLSRVTAAATIAIGGSAAAVASSSPGVAAVAAVPPGKVGGGVVVED
QPDVSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYN
QHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSY
QLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFF
GLLKEPEFDVPLDDEDEEGENEEGKPKKKKPKKDSVGSKSKKQDPNAPPQNRIPLPELKD
SDKLDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTV
RVWSVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPD
RNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWAT
DHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFTGHKGPIHS
LAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMDNT
VRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAA
GAYSSQ
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactacctgaagagccggcggaggtggtggtggtaaagccggaccctgaggcg
ggaacgtcgccgcagcagccccctgctgctcctccagccgccgctcctgccgctcccccg
gccgcggcggcggagggagaggcggcggggagcggtgcggaggcagctcccactaagcct
gcggcaccgggcccagccgcatctccgtcggcgctggaccggcagactctggtggccgtg
ctgcagttcctgcggcgcagcaacctccgcgagtccgaggagatcctgcggcgcgaagcc
cgcctgctcggcgacgatgtcggcgctgccgccctcagccccaccggcaccgggcttctg
ggaacggcgggcggcgatgcggactctgccggcgagaacgcgctgctcagccgggtcacc
gccgctgccactatcgcgatagggggcagcgccgctgctgtcgcctcttccagccctggg
gtggcggcggtcgcggccgtaccgccggggaaagttggaggaggagttgttgtggaagat
cagccagatgtgagtgcggtattgtctgcctacaatcagcagggggacccgacactgtat
gaggaatactacagtggattgaaacacttcattgagtgttccctggactgtcatcgagca
gaattatctcagctgttttatcctctctttgtgcacatgtacttggaattggtctacaat
caacatgagagtgaagcaaagtctttttttgaaagatttcatggggatcaggagtgctat
taccaggatgacctgcgtgtattatctagcttaaccaaaaaagaacatatgaaaggtaac
gagaccatgctggatttccgaacaagcaagtttgtgctgcgtatttcacgtgactcttac
caactcttgaagaggcatcttcaggaaaagcagaacaatcagatctggaacattgttcag
gaacatctttacattgatatctttgatggaatgcctcgcagtaaacaacagatagatgct
atggttggaagcttggctggggaggcaaaacgagaggctaataaagcaaaggttttcttt
ggtttattgaaagaaccagagtttgatgtgcctttggacgatgaagatgaagaaggagaa
aatgaggaaggaaagccaaagaagaaaaaacctaaaaaagatagtgtaggatcaaaaagc
aaaaaacaagaccctaatgctcctcctcaaaacagaattcctctgcctgaactgaaagac
tctgacaagctggataaagtaatgaatatgaaggaagctgcaaggcgtgtgcgtcttggc
ccggagtgcctgccctccatctgtttctacacgttccttaatgcttaccagggtctgact
gcagtggatattacagatgactcgagcatgattgtaggaggctttgctgactctactgtc
agagtctggtctgtgactccaaaaaagctgcgtagtgtgaaaacagcagcagacctcagt
ctcattgacaaagaatcagacgatgtcttggagaggatcatggatgagaaaacagcaagt
gagttgaagattttatatggtcacagtggacctgtctatggcaccagcttcagtcctgat
aggaactatctcttgtcctgttctgaggatggcaccgtcagattgtggagtctccaaaca
ttcacgtgtttggtgggatataaaggacacaactacccagtatgggatacacaattctct
ccttatggttattactttgtgtcagggggacacgacagagtggctcgtctgtgggcaaca
gatcactaccagcctttacggatatttgctggccatcttgctgatgtcacatgtacccga
tttcatccaaactctaactatattgccacgggctcggcagacaggactgtacggctctgg
gatgttttgaatgggaattgtgtaagaatattcacgggacataagggaccaattcattca
ttggcattttctcccaacggacggttcctggctactggagcaacagatggaagagttttg
ctgtgggatattgggcatggcttgatggttggagaattgaaagggcacacggacactatc
tacgcgctcagattcagtagagatggggagattttagcatcaggttcaatggataacaca
gttcgtctgtgggatgctgtgaaagcatttgaagatttagaaaccgatgactttactaca
gccactggacatataaacttgcctgaaaactcgcaggatttgttactaggtacatacatg
accaaatcaacccccgttgtacacctgcattttacacgcagaaacctgctgctggctgca
ggagcctacagctcacagtga
DBGET
integrated database retrieval system
