Chroicocephalus ridibundus (black-headed gull): 134517154
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Entry
134517154 CDS
T10910
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134517154 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF5006
DUF4869
Motif
Other DBs
NCBI-GeneID:
134517154
NCBI-ProteinID:
XP_063194448
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All DBs
Position
6:13835001..13891922
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AA seq
1523 aa
AA seq
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MGGNGMDSVTKKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKR
SYTHGSSYVTSSGSGRLNSSSSTSGYRQTQSPSSTLTKSPGSTFERKTYVNRHATYEGSS
SANSSPEFPRKEFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASC
SPTRSPSSTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYMWSSTLPAGSSLGG
YHNSSSLINAMSHSTGSVFGVPNNLAPSNHTLNAGLSTSSTVFGVQNNLSPSASSLTQNV
TAASAAYGMKNTSQNNTAASTGVSASAGGTVLTSQGDDILRKDCKFLLLEKENAPAKKEM
ELLIMTKDSGKVFSASTTGLNGGSFVEDTLKKEKQGFSSSYATDTGLKSDANGALKSVPT
RDKATYAEIRNGDAGGAIGSAPSWCPCRSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEE
VRKLKSRVENLEKINGGLLTINQGNPKIEKDVSRVDFLHGISPSSTFPYDNEESVWLMVK
SRLNKEVERGYFRGERGEPGEKGDMGMQGPRGERGLPGVPGIPGPIGHQGPEGPKGQKGS
MGDPGMEGPMGQRGREGLPGPRGEPGPPGFGEKGDRGAVGEPGPPGPPGPPGSAGLKGLM
GSPGPQGPPGPPGLQGFRGEAGLPGAKGEKGASGAPGPKGDQGEKGSRGMTGEQGSRGMP
GPPGEPGAKGPVGQAGRDGQPGEKGEPGLMGMPGARGPPGPTGDAGQPGLTGPQGPPGLP
GNPGRPGAKGETGAPGKVISAEGSSTIALPGPPGPPGPAGPTGPPGVPGPVGPAGLPGQQ
GPRGEKGSPGEAVIETIKTEVSSLASQMMADLQGRAGPPGPPGPPGESVQGPPGPRGPPG
EGLPGPPGPPGRPSSSMSTSETFLTGPPGPPGPPGPKGDQGERGPRGFTGEPGEPGLSAF
SSHGDRVTMQGPPGVPGPPGPPGPKGDAGVPGAPGIPGASRGGSRQIQGPPGPPGPPGPP
GPGGSSSQEIQQYITDYLKSDNVRHYLTGAQGPPGPPGPPGVITTADGTNLDYAELATRV
MSYMTSSSDRYQSFASSVSTTSVLYQELLDMLQREEIRRYLIGPQGPPGPPGPGGDGMSL
SLDYDELTRRFISYLTNSGMSIGLPGPPGPPGTPGISYSDLTAYLRNSEFSGLVGPPGPA
GPPGPPGIPGSPGTSLEDVSAYLQSVGYSSFSGVQGPPGPPGPPGPPGFSGTGLLSYADI
THSDEFRSELIQYLKSDEVRSYISGPPGPPGPRGPPGPKGDSGLVSGSMSSSYQGLRTSE
RLHGGSLDSEGSDRGSLGTGSSYGSSMSSMSSYSASMGSDGSYDASMGNDGSFDGLLTEE
ESHRRSASSSRSYSSSFSGSLDYNELALRVSESLQSQGILQDLMSYTAQGPAGPPGPPGP
PGISRVFAAYGNVTADLMDFFRTYGTIQGPPGEKGERGYPGPKGDPGPMGPPGRHGPRGP
KGEKGEKGEQVYVGRRKRRSVGV
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgggtggcaatggtatggattctgtaacaaagaaaacgcggcaagatggatcagaagtt
actgaaagacttattacagagactgtaaccacaagattgacgtccttaccacccaaagga
ggtagcagcagtgggctcaaaacatcatcccacactggaggaagcggagtggaaaagagg
tcttacacccatggcagcagctatgtgacttcaagtggaagtggtagactgaattcatca
tcatcaacatcgggctacagacaaacccagtctcccagctctactctcacgaaatcacct
ggctcaacatttgaaagaaaaacctatgtcaaccgccatgcaacgtatgaagggagctcc
agtgccaactcttctcctgagttccccagaaaagagtttgcatctgcctccacgagaggg
agaagccaaagtcgagagagtgaaatacgagtccgactgcagagtgcatctccctctggt
agatggacagagttggatgatgtgaaacgtttgctgaaaggaagtcgatcagccagctgc
agccctactcgatcaccgtcaagtacactcccgataccgaaaaaggctgtggtggagacg
aagatggttactgagagctctcagtcagtgtcagggacatatgatacaactatactgaat
accgccctcccttcatacatgtggtcctccactctgcctgctgggtcttcccttggtgga
taccataacagctcttccttgatcaatgctatgtctcactctacaggatcagtttttggt
gttccaaataacctggctcccagcaatcatactctgaacgcaggcctgagcacttcctct
acagtgtttggagttcaaaacaacctgtctccaagtgcttcatccttgacccagaatgtt
actgcagcctccgcagcatatgggatgaagaacacgtctcagaacaacactgcagcaagt
actggtgtgtctgcctcagcagggggaactgttttgacctcccagggagatgacattctg
cgcaaagactgcaagttcctgttgctggagaaggagaatgccccagcaaagaaggagatg
gagctcttgatcatgacaaaggacagtggcaaagtctttagtgcctccaccactgggctt
aatggaggatcctttgtagaagacaccttgaagaaagagaagcagggattttcctcctct
tacgctacagatactggcctaaaatcagatgcaaatggagcactgaaatctgtgccaaca
agggacaaagcaacttatgcagaaatacgaaatggtgatgcagggggtgcaattggatca
gcaccatcctggtgtccctgtcgttcctgctgcagctggtggaaatggctcctgggtttg
cttctggcctggttgcttctccttggattgctttttggcctcattgctctggcggaagaa
gtgagaaagctgaaatctcgtgtggaaaacctggaaaaaatcaatggcggcctcctgaca
attaaccaagggaatccaaaaatagaaaaggatgtttcaagagtagactttcttcatggt
atttcaccctcctcaaccttcccttatgacaatgaagagtcagtttggttgatggtgaaa
agcagactgaacaaggaagtagaacgaggctacttccgaggggagagaggagaacctggt
gagaaaggtgacatgggaatgcaaggtcccagaggagagcgaggacttcctggtgtccca
ggcattcctggtccaattgggcaccaaggaccagagggaccgaaaggacagaaaggcagc
atgggtgatcctggcatggaaggtcccatgggacaaagaggtcgagaagggctaccaggg
cctcgaggggagcctggacccccaggatttggagaaaaaggagacagaggtgcggttggt
gagccaggtcctccagggccacctggtcccccaggttctgctggccttaaaggtctgatg
ggttctccaggcccacaaggtcctccaggtcctcccggcctacaaggatttagaggagaa
gcaggtctcccaggtgctaaaggtgagaaaggagccagtggagcccctggacccaaaggt
gatcagggtgagaagggttctcgtggaatgacaggtgaacaaggctcaagaggaatgcct
ggtcctccaggagagccaggggctaaaggacctgtaggacaagctggccgtgatggacag
ccaggtgaaaaaggtgaaccaggtcttatgggaatgccaggagcccgaggccctccagga
cccactggcgatgcaggacagccaggtctcacaggaccccaaggaccaccaggacttcca
ggcaacccaggccgaccaggggctaaaggagaaactggagctccaggaaaagtcataagt
gctgagggttcgtcaactattgctctgccaggcccaccaggtcccccaggcccagccggc
cccactggacccccaggtgttccaggtcctgttggaccagctggtctccctggacagcaa
ggtccacggggtgagaagggatccccaggtgaagctgtgatagaaactatcaaaacagaa
gtctcatcattagcatctcaaatgatggcagatttacaagggcgagcaggaccaccaggt
ccccctggaccaccaggtgaatctgtgcagggaccccctggacctcgtggccccccagga
gagggattgccaggacctccaggcccaccagggagaccatcatcttccatgtccacctca
gaaacattcctcacaggcccaccaggtccaccaggcccaccaggcccgaagggagaccaa
ggcgaacgaggtccacggggattcacaggagaaccgggtgagcctggcctttcagcgttc
tcctcccacggtgacagagttaccatgcagggacctccaggagttccaggtccgccaggc
ccacctgggcccaaaggtgatgcaggtgtcccaggcgctcctggcatcccaggagcatct
cgaggtggatccagacaaattcagggacctccaggacctcctgggccacccggtcctcct
ggcccaggtggaagttcatctcaagagattcagcagtacatcactgactacctaaagagt
gacaacgtaaggcattatttgactggtgcccaaggcccaccaggccctccaggcccacct
ggagtcatcaccactgcggatgggacaaacttggattatgcggagctggctacccgtgtt
atgagctatatgacaagctcttcagatcgctatcagtcatttgccagttcagtatcaact
acatccgttttgtaccaagaacttctggacatgctgcagagagaagaaattcgtcggtat
ctaattggacctcagggcccaccgggacctcctggaccagggggagatggcatgtctctg
tcactggattatgatgagctgaccagacggtttatcagctacttgacaaattctgggatg
agcattgggctccctggaccacctgggcctccagggacacctggtatatcttacagtgac
ctgacagcatacctgcgaaactctgaattcagtggtcttgttgggccccctggtcctgca
gggcccccaggccctccagggatccctggatcacctggcacctctctggaggacgtctct
gcttacctacaaagtgtgggatactcctccttctctggagtccagggtccacctggtcct
cctggccctccaggaccaccaggcttctcaggaaccggcctcctgtcctatgctgacatc
acccacagtgacgagttcaggagtgagctgatccagtacctgaagagtgatgaagttcgg
agctatatctcagggccacctgggccccctggaccacgaggaccaccaggacccaaagga
gatagtggcttggtgtctgggtctatgtcgtcatcataccaagggttacggacttccgag
cggttgcatggaggatcccttgattctgagggatccgacaggggatcactgggcacaggc
agctcatatggcagctccatgagcagcatgtcatcttacagtgcctcgatgggcagtgat
ggctcctatgatgcctccatgggcaatgatgggtctttcgatgggttgctgacagaagag
gaatcacacaggagatcagccagttcaagtagatcctacagcagctccttcagtggttcc
ctggattacaacgagctggcactccgcgtgtcagagagcctacagagccaaggtattctc
caggacctgatgtcttacactgcacagggacctgcaggtcctccaggccctcctggtccc
cctggcatcagcagggtctttgcagcctatggcaatgtcaccgcagacctcatggacttc
tttagaacatatggtaccatccaggggccacccggtgaaaagggagagaggggttatcct
ggacccaaaggtgaccctggaccgatggggccgccaggacgccatgggcccaggggaccg
aaaggagagaaaggagagaaaggtgaacaagtgtatgttggcagaagaaaaagaagaagt
gttggggtttaa
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integrated database retrieval system
