Chroicocephalus ridibundus (black-headed gull): 134517476
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Entry
134517476 CDS
T10910
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04382
Cornified envelope formation
crid04510
Focal adhesion
crid04512
ECM-receptor interaction
crid04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134517476
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134517476
09142 Cell motility
04820 Cytoskeleton in muscle cells
134517476
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134517476
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
crid04147
]
134517476
00536 Glycosaminoglycan binding proteins [BR:
crid00536
]
134517476
Exosome [BR:
crid04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134517476
Glycosaminoglycan binding proteins [BR:
crid00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134517476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134517476
NCBI-ProteinID:
XP_063195084
LinkDB
All DBs
Position
6:50640520..50715001
Genome browser
AA seq
1681 aa
AA seq
DB search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NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcgtttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcagcacaagaaattgacgggggaggatatgcatatattgaccct
tgtgggggacaggattgttcagtttgccggtgctttccagaaaaaggatcaagaggtcgg
cctggtgagctgggagctcagggtccgattgggtccttgggatctacaggaccagctggt
ctgccaggggaaaaaggacggagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccgggatttcctggtttagacggtgttcctggatta
ccaggaagtgaaggacccaggggcaagcgtggttttgatggctacaatggctcaagagga
gatccaggacttccaggagaaaatggctatagtggaccaagaggtccttatggaaatcca
gggcaaaaaggagaaaaaggaaattccgtgtatgtttcatattttggaaaaggacctccg
ggagacagaggtgatcctggacaccctggcattcctggacctagagggtcgagaggtaca
acgggcccatctggatacccaggccaaccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gacatcggacttcctgggccacctgggttaccactgttagttggacctcctggagctcag
ctgttcaaaggagaaaagggccaaaaaggactacctggagtaacaggatacagagggcca
cgtggacccaaaggtgtacttgggagaggagaaaagggtgaaaaaggcattcctggattc
cctggattgaggggtgatcctggttcttatggacctgcaggttttcctggaatgaagggg
gaaacaggatttgctggttttcctggacaacctggctctccaggcagacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactctgctgcctcctataaaa
ggtccacaaggagatcctggatttccaggtcctgctggtgatctggggtcagttggacca
attggtcctgcaggcccactaggaagaccaggagatgatggaacaagtctgcctggactg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggtgaccctggtttccctgga
acaggtgaatcaattccaggaagacctggatttcctggaccaccaggcctaccaggacag
ccaggaagacaaggcttacctggactacctagtgtcatctgtactgacagagggatccca
ggagaacctggagcaaaaggtcagataggccttccgggaagaaaaggtgaaaaaggagaa
aagggaaatcaaggcctgtgctcatgtagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtactcaaggaaggaaaggacaaatgggatatcctggaagacatggagaa
aagggtgatccaggcttatccggtgcagtgggatcaccagggctccctggtatacctggt
tctgctggacaacatggtgaaaaaggagagaagggagatccaggaagagttagaataaaa
ggaataaaaggtgaaagaggtcctcctggagttccaggatttgcaggccaaagaggtaac
gatggcagagatggggaactaggattgcctggggaaaaaggagctgagggcgattctgga
gtaccgctaccaggtgataaaggattccctggggtcccaggacttcctgggataaaagga
cagatgggattgcctggtttggggtttcctggccctccaggagtcagaggtagccctgga
gactttggtgacactggtagtgttgggccacctggtccaaagggccagaaaggtgagact
gtctgcattacgctaccataccctggaaatccaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactccccggtggccctggaccaaatggctttgatgggcaa
aaaggccatcaaggcaggccaggagcaggaatccctgggccagaaggctttcgaggcgaa
gctggtgatcctggtgatgaaggtgaaagaggacctacaattgatggtaaaaatggccct
ccaggtccacctggcataggtggtcagaaaggtgttccaggtgataccacgtatggtcct
ccaggaatcccaggcaacaggggacttccaggaccccctggtgcacaaggagcaaggggt
gatccaggcattcctggacttcgaggacagcctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatagaggagcaccaggctgtccaggcttccctggccca
ccatgtgacacgggcttaccagggccaccaggactcagaggtgtcacgggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggagacaggggcctagctgggccacca
ggaatcaaaggtctgaaaggctcacctggctcacaaggtcctccaggtcctccaggctcc
cgaggacttccaggatttccaggcaataaaggaccacctggtttgccaggacaaccagga
agcaaagggattcaaggaccccaaggattcccaggactcccaggaacacaaggcccagtg
ggaatctccggcgtaaagggcgaagaaggaaaaatgggtccacctgggcctagtggagaa
cgtggagatatgggattaaaaggtgagagagggcctccaggagacagtggcagcattaac
atccgtctcgagaaaggacaaaagggggaaccagggtttcctggtgagagcgggtttaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcactccaggctttccagggaag
aacggtgtcccaggactgccaggtgaccatggtgacaccggactgatggggtttccagga
tcacggggtttcccaggaccaaagggctttaaaggaattacgggttttcaaggacaacca
ggtgaccagggtgacgttggcttaccaggaatccctggaaatccaggactgactggccca
aaaggatctaaaggccagagaggtgacccaactcctctgcttggttcacctggtcgaaaa
gggcctcccggagatccaggattaccaggactctgtggattcccaggagagaagggttca
ccaggtatccaagggcaacctggaagaccaggatccaagggtgaccctggatacccagga
atacctggatttccaggagctacaggtcctcagggatttccaggagaacctggagaaaga
gggaaacatggcattttgggacccccaggattgcaaggattacctggatcccaaggcagg
aaaggtcttcctggactgcccggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagttccaggtcaaagtgaaacagggcccccaggatacccaggagaacttgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggttcccctgga
gaaaggggattcccaggattcccaggtagaagaggacctattggacccactggacctatg
ggaaaatctccttatagtgcttctcctggtcctccaggtgatcaaggaccacctggtttg
gatggcatcagaggtcatcctgggaatcctggtcctcctggcgagactgtctttgtgcga
ggagatccaggcgatattggtattcgaggggcaccaggtaatcctgggcagcgagggcaa
caaggagccagaggtcttccagggaaccaaggaagaagaggcctgaagggtcctatggga
gtccatggcccgcagggtccacctggtgctataggacaaccaggagaccagggttctcaa
ggaaaacctggacccaaaggtcccccaggtttcataggtgaccctggtgaaccaggaaaa
atagatgattcatgcccttccatcccagggcctcctggggacgcagggcaaagaggacac
gatggctctgtaggattaccagggccaatgggccaccctggaccccaaggagcaaaagga
gaagaagggtcatgcggcctgccgggtcaagatggcttacctggggcacctgggccacca
ggtgaccaagggcatgtaggagagcaaggatatgctgggccgcaaggtccacctggccag
actggtatcccaggaccaccaggcccccatattagatctgcgagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccactctgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagagaaagctcataatcaggatcttggtctg
gcaggatcttgtcttcccgtgtttaacaccatgccctttgcttactgtaacatcaaccaa
gtttgttactatgccagtcgaaatgataagtcttactggttgtcgagtgccgctcctcta
ccgatgacaccactctctgaagaagaaatacagccatatataagcagatgtgctgtgtgt
gaggccccagcccaagcggtggcagttcacagccaagatcagtcaattcccccctgccca
gtgaactggagaagtctttggataggatattcttttttgatgcacactggatctggtgat
cagggtggtggacagtctctaatgtcacctggaagttgcctagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacatgtcagttttttgctaatgaatacagt
ttctggctaacaacagtgatgcctgaattgcagtttgcatcagcccctctgtcaggaact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgtctgagacat
ggctaa
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