Chroicocephalus ridibundus (black-headed gull): 134517575
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Entry
134517575 CDS
T10910
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
Ribosome biogenesis [BR:
crid03009
]
Eukaryotic type
90S particles
Other 90S particles
134517575 (PDCD11)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
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NCBI-GeneID:
134517575
NCBI-ProteinID:
XP_063195286
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Position
6:complement(14484766..14512395)
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AA seq
1837 aa
AA seq
DB search
MPSMEENFPRGGIQKKPTEGKTPNAKLERDNLFDVQHEEQSKKRKRSQSDQGKQKKFKAD
KTAAAKDSVVNIEPLTIEAVCEGMLLLGCVKEVSDYELVVSLPNGLSGFVPVTQISDAYS
KMLSKQVAQGELLEDLNSLPDMYSPGTLVRCIVTSVEKSADGRRSIKLSIDPRKVNKGLN
ASALASGMLLSGFVSSVEDHGYLIDIGVSGTHAFLPRQKAQNYIKAVKRGSDLKIGQNLN
CVIVEVKNEGRVVRLSIDRSEVAASLATERQNWALSSLLPGLVVKARVQKVAPLGIKVSF
LSSFTGIVDFMHVDPEKSMNYSPDQVMKACILSVHPTSKVVRLTLRQSFLHPGGSPNQLS
SDRMGAVVEESTVKAFYKQFGAIFELDDGTLAFARLKHLSKNRKSFKPGAFKAGCKHKCR
IIDYSLMDEMCIISLKYQVIEARFLQYQDIHTGDVVQGKVLALKPIGMQVKVTDGIRGLV
PSMHLADVILKQPEKKYNIGDEVQCRVLECNPGGKKLILTLKKSLVQSKLPVLSNYEDAK
PGLITHGFVVCAKEFGCIVKFYNDVKGLVPKHELSSEPISCPDKVFHDGQVVKVMVLKCE
PQQERLLLSFRLSSKPAPEDKKECTPKKRQEVKYQIGEMVDVKVLKKKHNGLEVSILEDE
GTVIAWIPTMHLSDFVVNCKLLWHCLQEGDVLPRVMCLSDKGEHITLSRKSAVISAVQEE
QVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKEMKEIRNLLRRRGEPSV
ARGLCELVPGKELQLVVQDVKEDGSALFSGSCVTGLTVTATRYHLGDKNIVPGEKTKALV
LHVDALTSRVYVSLQEELLKQRPKQRFTENSQHSAIVQHVAEEFAIVSLLETGHLAAIPI
ASHFNDTFRFDSEKLKVGQTISATLKVVKVNDHGVLLAVQGPAKKNVFLRVRKESETALE
EMLAPVEHSLSLGDIVTGTVKSIKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTYTLK
AGQKVTARVIGGRDVNTHRYLPITHPHFTQSIPELSIQPSEIEGEVTEMLNLKEDSALKK
LELYSVGQTVTCFVKKYNILKNWLEVEVTPDIRGRVPQLLLSLNTKVLKHPEKSFKNGQA
ISATVTGTDVTETNLCLSLTGIQSLEQGTITVGMVTNVTPHVGLTMALPGGKTGRVSIFH
LNDTYTENPLGDFKVGRIVRCYILSNKNGKIQLSLRQSRLNPKSNSKVKDVEITCIKDVK
KGQLVRGYVKSITPSGVFFGLSTSLLSRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVL
GVTEKHIELSLLPEDTGMPSVLPESLDLPRYDAEEEKGEADDREKREELKMKTKRRRGDS
ESEQQEKPKKKKICPADENDSGIEVYYREEEEEDDQEEEAAKKKSKIKKHGEAPRLQVSM
GFTWDEDMNAMEMPALNQKEESSESEEEEDPQSKLKKQTKKEKELEKQKKEKELCKLEAA
LMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREE
QEKLNVWVALLNLENMYGTEESLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQAEELY
HTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRF
GDPEHAKALFESTLSTYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFF
FKRYLDYEKKFGTAESVLAVKRAALEYVETKSSIADT
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atgccatccatggaagaaaactttcctcgagggggcatccagaaaaaacccacggaggga
aaaacaccaaacgcaaaattagagcgggacaatttgtttgatgttcaacatgaagaacaa
tccaagaaaagaaaaaggagccaaagtgatcaaggaaagcagaaaaagttcaaggcagac
aaaacagctgctgctaaagacagtgttgtgaatattgaaccactcacaatcgaggcagtc
tgtgaggggatgctgctccttggttgtgtaaaggaggtcagtgactacgagctagttgtc
agcttgcccaatggactttcaggatttgtgccggtcacacaaatcagtgatgcctacagc
aaaatgctgagcaagcaggtggcccaaggagaactcctggaggacttgaattcgctcccg
gacatgtattctccagggacactggtcaggtgcattgtgaccagtgttgagaaaagtgct
gatggacgtcggagtatcaaattatcgatcgaccccaggaaggtcaataagggtctgaat
gcttcagcattagcatcaggcatgctgctctctggctttgtgtctagtgtagaagaccat
ggctacctcattgatattggagtcagtgggactcacgctttcttgcctcgtcagaaagcc
caaaattatatcaaagcagtcaagagagggtcggacttgaaaataggccagaacttgaac
tgtgtcattgtggaagtaaagaacgagggaagagtggtccgtttgtccattgatcggtca
gaggttgctgcatcccttgcaacagagcgacagaactgggccctctctagtttattacca
gggctggtggtgaaagctcgagtgcagaaggtggccccacttgggatcaaagtgagcttt
ctgtcttccttcactggcattgtggatttcatgcacgtggacccagagaaatccatgaac
tattctccagatcaagtgatgaaagcttgcatcctctctgtccaccccacctccaaggtg
gtacggcttactctacggcagtccttcctccaccctgggggatccccaaaccagctctcc
agtgatcgcatgggggcagtggtggaagagtcaacagtgaaagctttctacaaacagttt
ggtgccatctttgagcttgatgatggcactcttgcatttgcacggttgaaacatctttca
aaaaacagaaaatcctttaaacctggggcatttaaggcaggatgcaaacataaatgtcgg
atcattgactacagcctgatggatgagatgtgtattatatctctgaagtatcaggttatt
gaggcacggtttctgcaataccaggatatccacacaggggatgtggtgcagggcaaagta
cttgcattgaaacccattgggatgcaggtgaaagtgactgatgggattaggggtcttgta
ccatccatgcatcttgctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtccagtgtcgggtgctagagtgcaatcctggaggaaagaagctgatccttact
ctaaagaagagtctcgtccaatcaaagcttccagtcctctccaattatgaagatgcaaaa
ccaggtctgatcacacatggctttgtggtgtgcgcaaaggagtttggctgcattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagcatgagctgagctcagaacccatatct
tgtccagataaagtcttccacgatggccaggttgttaaagtaatggtcttaaaatgtgag
ccccagcaggaaagactcttgttgtccttcaggttatcaagcaagcctgccccagaggac
aaaaaggaatgtactccaaagaagagacaggaagtgaaataccaaataggagagatggtt
gatgtgaaagtcttgaagaagaaacataatgggctagaggtttctatcttagaagatgaa
ggcactgtgatagcctggattcccacaatgcacctctctgacttcgttgtgaactgcaag
cttctgtggcattgtcttcaagagggagatgtcctgcccagagttatgtgcctaagtgac
aagggagagcatatcaccttgagcagaaagtctgcagtgatttctgctgtacaggaggag
caagttgtgcgaagtttctctgaaatccagcctgggatgctgttgactggttacgtgagg
aatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactggcgccc
aaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtgggacag
accgtgattgcgaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctg
aaagtgtcagagtgcagctcaggcgattctgctgcggagagctttgccctgctgaatcaa
tatttcaaggagatgaaagaaatcaggaacttgttgagaagaagaggggagcccagcgtg
gcccgaggcctttgtgagttggtgcctgggaaggagctgcagctggtcgtgcaggatgtg
aaggaggatggctcagcactgttcagtggcagctgtgtcacaggcttgactgtaacagcc
actcgctaccatttgggagacaaaaatattgttcctggtgagaaaaccaaggcattggtt
cttcatgtggatgccctcacatccagggtgtatgtttctcttcaggaagaactgttaaaa
caaagacccaagcaacggttcacagagaactcccagcactctgctatcgtgcagcatgta
gcagaagagtttgccatcgtgtctttgttggaaacaggccatctggcagctatccccata
gcctctcacttcaatgacaccttccgctttgactcagaaaaactgaaggtgggacaaaca
atctctgcaaccttaaaagtagtgaaggtgaatgaccatggagtcttattagcagtacaa
ggcccagcaaagaagaatgtttttctgagggttcggaaagaatctgagacagcattagaa
gagatgcttgctcctgtggaacactcgctttccctgggggatattgttactggtactgtt
aaatccatcaaaccaacccatgtcacagttgctattgatgacaagctgacaggttcaatc
catgcatcccggattctggacgaagtgcccataggttcttttccaacgtatactctgaaa
gctggacagaaggtgactgcccgagtcattggaggcagagatgtgaatactcacaggtac
ctgcccatcacccatccacacttcacacagtccattccagagctcagcattcaaccaagc
gaaatagaaggggaagtcacagaaatgctgaaccttaaagaagacagtgccctcaagaaa
cttgaactctacagcgttggacagacagtcacctgttttgtgaaaaagtataacatcctc
aaaaactggctggaggtagaagtcacccctgacattcgaggaagagttcctcagctgctg
ctgtctctcaacaccaaggtcttaaaacatccagaaaagagcttcaaaaatggccaggca
atatcagctacagtgactggaacagatgtcaccgaaacaaacctctgcttgtcactcaca
ggaattcagtcactggaacagggcaccatcactgtaggcatggtaacaaatgtgactcca
cacgttggtttgaccatggcgctgccaggtgggaagactggcagagtcagcatctttcac
ctgaatgatacttatacagagaatcctctgggtgacttcaaagttggcaggattgtcagg
tgctacatcctctccaataagaatggcaaaatccagttatctctccggcagtcccggcta
aacccaaagagcaacagcaaagtaaaggatgttgaaatcacatgtattaaggatgttaaa
aaaggccagctagtgagaggctacgtgaaatcaatcactccatcaggtgtattctttggc
ttgtccacttcccttctgagccgaatcttgttccagaatgtttccccttactttgtacag
aaacactccttatatgaaaagtacctgcccgaaggaaagctgctcactgcgaaggtgctt
ggtgtaacagaaaaacacattgagctctctctcctgcctgaggacactggaatgccgagc
gtcttacctgaatccctagacctaccacgatatgatgcagaggaagagaaaggagaggca
gatgatagggaaaagagagaagagcttaagatgaagacaaaacggagaagaggagactct
gaaagtgagcagcaggaaaagccaaaaaaaaagaagatctgcccagcagatgaaaatgac
agtggaattgaggtatattaccgggaggaggaggaggaggatgaccaggaggaagaggca
gctaaaaagaaatctaagataaagaaacatggtgaagctcccaggctgcaggtttccatg
ggtttcacctgggatgaggacatgaatgcaatggagatgcctgcactgaatcagaaggaa
gagagctcagaaagcgaggaggaggaggatccacagtctaagctgaagaaacaaacaaag
aaggagaaggaactggagaagcagaagaaggagaaggagctctgcaaattagaggcagct
ctcatggaccccagtcgacagccccagtcagcagatgactttgaccgcctggtgctgagc
agtcccaacagctctatcctctggctacagtacatggctttccacctccaggctactgag
attgagaaggccagagctgtggcagagcgagcgcttaaaacaatctgcttcagggaagaa
caggagaagttgaatgtctgggtagctctgctgaacttggagaacatgtatggtactgag
gagtcactgatgaaggtctttgagagagccgttcaatacaacgaacctctgaaagtcttc
cagcatctgtgtgacatctatgccaattctgagaagtacaagcaagcggaagaattgtac
cacacaatgctgaagcgtttccgtcaggagaaatctgtgtggctgaaatacgcctctttc
ctcctgaagcaaggccagactgaagctacacacaggcttttggagcgtgctctcaaggct
ttgcctaccaaagaacatgtggatgtcatttcaaggtttgcacagctagagttccgtttt
ggggacccagaacatgccaaagccctcttcgagagcacccttagcacctatcccaagcgg
acagacatctggtccatctacatggacatcatgatcaaacatggcagccagaaggaagta
cgggacatctttgagagggtcatacacctgagcttggcaccaaagaagatgaagttcttc
tttaaacgctacctggattacgagaagaaatttggtacagcagaaagtgtcctggctgtt
aaaagagcagcacttgagtatgtggagaccaagagttccattgctgacacctaa
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