Chroicocephalus ridibundus (black-headed gull): 134518167
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Entry
134518167 CDS
T10910
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03410
Base excision repair
Brite
Enzymes [BR:
crid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134518167 (LIG3)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
134518167 (LIG3)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134518167
NCBI-ProteinID:
XP_063196596
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Position
7:56741379..56757114
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AA seq
995 aa
AA seq
DB search
MPTGSRTLSQAARALSRGTGLFSPHTQVSLPRPYLCCLGLPGASPNYWYQLLLRRVSLQS
TGGNQGGGAGIFHFSVLLNAWLRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGM
VRIGKIVPNPFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDAEKDL
INKHISEANSKAASTPKKKVIVQAKLTATGQLTTKDPLALITPSPKKFSGFTAKPKNSED
VSANSDHKSSLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDG
FHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMIRDLEQGDVSETIRLFF
EQSKSCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHITRRCTGNDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQQEAEKMPGLKRTLSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFNYFSRSLKPVLPHKV
AHFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDISLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLV
LKDIKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
KSEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKK
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADF
SVAAGEEDESTAGSSGENEGNSRSSTPHSAIKSPPSKSPAKAQKPEESKAVAGSPQKSEE
KRGEKRKASEMEDNGKKTLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASA
THVIGEDIDENPGAKRVSPNWIWECIRKRRLVAPC
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgcccacaggcagcaggacactgtcacaagctgcccgagcactcagcaggggcacagga
ctattctccccccatacacaggtctccttgccaagaccctacctttgctgccttggcctc
cctggggccagccccaattactggtaccagctgctgttacggcgtgtatctctccagtcc
acaggcggaaaccaaggtggtggtgctgggattttccacttctccgtgcttttgaacgct
tggcttcgccaagcttgcacagctgcagaggacatggcagaacagagatactgcgtagac
tatgccaagcgtggcacagcaggctgcaagaagtgcaaggagaagatcgtgaaaggaatg
gtgcgcattggaaagattgttcccaatcctttcacggagtctggtggggacatgaaggag
tggtaccatgtgaagtgcatgtttgagaagttagataaggccagggccaccaccaagaaa
atcgaagacatcacagacttggaaggatgggaagagctacaagatgcggagaaagactta
atcaacaagcacatctcagaagctaattccaaggctgcaagtacaccgaagaaaaaagtg
atagtccaagctaaactcactgccacaggacaactaactacaaaagatccgttagctctc
atcactccatcaccaaagaagttctctggcttcacagcaaagccaaagaattcagaagat
gtctctgcaaactctgaccacaagtctagcctatctgcaaaaaaatgtgatccgaaacat
aaagactgcttgctgcgagagttcaggaagctttgtgccatggttgctgaaaagcccagc
tataacgtgaaaacgcaaatcatccaggattttctgaagaagggatctggaggagatggt
tttcatggtgatgtatacctgaccatcaagctgctcttaccaggcgtcattaaaattgtt
tacaacttgaacgataagcagatcgtaaagctgtttagtaggatttttaactgcaaccaa
gaagaaatgatccgggacctggagcagggagatgtttccgagaccatacgcctcttcttt
gaacagagcaagtcttgtcctccagcagccaaaagtctcctgaccatccaagaggtagat
gaattcctaatccagctgtcaaaactgactaaggaagatgaccagcaaagtgtgctgcaa
catatcactcgcaggtgtacgggcaatgacctgaaatgcatcatcaggctaattaagcat
gacttgaaaatgaacgctggagcaaagcatgtgctggatgctttggatcccaatgcttac
gaggcattcaaagcatcacgcaacctccaggatgtggtagagcgagtcctgaagaaccag
caggaggccgagaagatgccaggtctgaagcgaaccctcagtgtgcaggcctccctgatg
acccccgttcagcccatgctggctgaagcctgcaagtccattgagtatgccatgaagaag
tgcccaaatggcatgtatgcagagatcaaatatgatggcgagcgggtgcaggtccataaa
aatggagatcattttaactacttcagcagaagcctcaaacctgttcttccacataaagta
gctcattttaaggacttcatcccccaggctttccctggtgggcaaagtatgatcctggat
tcagaagttcttctgattgacaacaaaactggcaagccacttccttttgggactcttggt
gtgcacaagaaagctgctttccaagacgccaacgtttgcttgtttgtgtttgactgcatc
tatttcaatgacatcagcctgatggacaggcctctgtgtgaacgtcgtaagtttctccat
gataacatggttgaaatccccaaccgcatcctcttctcggagatgaagcacgtcacaaaa
gcttcagatctggcagatatgatcacccgagtcatccgtgagggactagaaggactggtg
ttgaaagacataaagggtaattatgaaccaggaaaacgacactggctgaaagtgaaaaag
gactacttaaacgagggtgcaatggctgacacagcagacctggtggtgctgggagctttc
tatggacaaggtagtaaaggtgggatgatgtccatcttcctcatgggttgctatgatccc
aagagtgagaagtggtgcactgtgaccaagtgttctggtggccatgatgatgccaccttg
gcgcgtctgcaaacagagctggatatggtgaagatcagcaaggatcctagtaaaattcca
aggtggctgaaaattaacaaaatctactacccagacttcattgtcccggatccaaagaaa
gccccagtgtgggagatcacaggggctgaattctctaaagccgaagcccacactgcagat
gggatctccatccgcttccctcgctgcacccgcattcgagatgacaaagactggaagaca
gccaccaacctccagcagcttaaggagctgtaccagctctccaaagagaaggctgatttc
agcgtcgctgctggggaggaagatgagtccacggctggcagcagtggagagaacgaggga
aactccaggtcttccacaccacacagcgctattaaatctcccccaagcaagtcacctgca
aaagcccagaagccagaagagagcaaagcagtcgctggatcccctcaaaaatcagaggag
aaacgaggggagaagagaaaagcatctgagatggaggacaatggaaaaaagacgctgctg
gacatattcactggtgtgaagctgtacctatcgccctctgtgaaggactttgacaaaatc
cggcggtactttatagcatatgatggggatcttgtgccagagtttgacacagcctccgca
acgcatgttataggggaggacattgatgagaatcctggcgctaagcgtgtgtctcccaac
tggatctgggaatgcatccggaaacggagactggtggccccatgctag
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