Chroicocephalus ridibundus (black-headed gull): 134518408
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Entry
134518408 CDS
T10910
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
Exosome [BR:
crid04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134518408 (COL18A1)
Proteoglycans [BR:
crid00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
134518408 (COL18A1)
Glycosaminoglycan binding proteins [BR:
crid00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134518408 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134518408
NCBI-ProteinID:
XP_063197227
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Position
7:22347632..22388997
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AA seq
1739 aa
AA seq
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MAPAPPRLEFLLLLACCFSSSDTQLLDWIWGSTNTTGSPAAPGVGTAPPEPLATTPTPST
SPGTWGVQVVGDITTPQRQEMDPSTAAPAGEGTVSENTKQWDRNATGLVESTARPSIAPP
HSTSPAHGQGAARSSTKDLQLLGTGTTKDPQVLGMGNTEDRQLLGTGTPAATGTQVSLQR
PAGLRPGSAPFPFSPGDTNRKQAVPPRDPTVQLPRHHHGASPASPLGTGHWGLVLAGMNG
SRSPPLPNGRAANSVDPPLVNTSGPLEFDLLTAATRLYSSSSTELVSLPGLLPPAGRCLP
VPTHLPFCSILGTNHFRLPNYLRHGSEAEIRAALHEWEGLLESQCHRYVKWFVCLLLLPG
CSALVPVTPPPCQGFCEAVRDLCWMHLAGGRLPLPCDALPEEDEGYSCVFINASAENLST
EVSLLELIGDPPPEEILKIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQP
TTPRAGVLFAVTDSSQSIIYVGIKLSELRAGKQQIIFYYTEPGSPSSYAAATFTVPTMLN
QWTRFAISVEEDEVVLYLDCEEHERVRFERSPDEMELEDGSGLFVAQAGGADPDKYQGVI
ADLKLQGDPRAAERQCEEEEDDTEEVSGDFGSGAEGGHQPSGKDRGVPGLVDAVPVTSPP
VAAGGGPRRGGGSPQQAERTRAEDTLQVSTGGTGPKGEKGEKGERGLKGDSGTGSIVGTG
SVKGEKGEKGELGIKGSAGFGYPGSKGQKGEPGDPGPPGTLSRHSDGLVVEQVTGPPGPP
GKDGAPGRDGEPGDPGEDGKPGDMGPQGFPGMPGEPGLKGEKGEPGIGPRGPPGPPGPPG
PPGPSSKHDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNHTDL
QGPPGLPGRDGTPGSPGPQGPPGRDGAAGQPGPKGEQGDVGDLGLPGAPGPKGSKGETGP
AGAPGEMGLAGLPGPIGPRGQPGPPGPPGPPGLGYEAGFGDMEGSGLPFAASSPGPPGPE
GPQGVPGLPGVKGEVGSPGQPGLPGPKGDTGVPGVDGRPGLEGFPGPQGPKGDRGSPGEK
GERGQDGVGLPGPPGPPGPPGQVIAVSGKDKSSVALPGPEGRQGHAGFPGPVGPKGDRGS
SGPQGSPGLKGEKGEPGVIISPDGTVVTAQVKGEKGEPGLRGPMGPSGPQGRAGMKGEIG
FPGRPGRPGMNGLKGEKGDPVDVSSVLGLQGPPGPPGPPGPPGPPGSIAYDSSNAFSDSG
HPVLPAFPGFHQFPGQKGEKGDAGAPGPPGHFSYDLSHFGANLQGDKGEPGPKGEKGEPG
NTPLYGPSVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPG
PPGQPSFPGPHRQAISIPGPPGPPGPPGPPGTSGMSFGLRTLPTYQAMLSAAHELPEGGL
IFLTDRQELYVRLRGGFRRVLLEEHTLIPSSALDNEVYDKPPSIHYAGPQPPLQPRGPLH
PLHNHSPLPTARPWRGDEVVANQHRLPEQPLLHHQHELLNSYYIHRRPDPAPVAAHVHQD
FQPALHLVALNAPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVRRAD
RATVPIVNLRDEVLFSNWEALFTGSGAPLQAGTRILSFDGRDILQDAGWPQKSIWHGSDA
KGRRLPESYCETWRTEERSATGQASSLASGKLLEQVASSCQHAFIVLCIENSFMTAAKK
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atggccccggctccgcctcgcttggagtttctgctcctcctggcttgctgcttctcctcc
tccgatactcagctcctggactggatttggggcagcacaaacaccacgggaagcccagca
gcacccggtgtgggaaccgcaccgccggagcctcttgccactactcccacccccagcacg
tccccagggacatggggtgtccaggtggtgggggacatcaccaccccacagcgccaggag
atggatcccagcacagcagcacctgccggcgaggggactgtgtctgaaaacaccaagcag
tgggacaggaatgccacggggctggtggagagcacagcacggccaagcatcgctcctccc
cacagcacatcacctgcccatggccagggtgcggccagaagctccaccaaggacctgcag
ctcctggggacagggaccaccaaggacccacaggtcctggggatggggaacaccgaggat
cggcagctcctggggacagggacccccgcagcaacagggacacaggtgtccttgcagaga
ccagcgggtcttcggccaggtagtgccccttttcctttctcaccaggtgacactaaccgt
aagcaggcggtgccaccccgggaccccacggtgcaactgccccgacaccaccacggagca
tcgcccgcctcaccgctcggcactggccactgggggctggtgctggctggcatgaatggg
agccggagccctcctttgcctaacgggagggcagctaacagtgtggatcctcctcttgtc
aatacctccggtcctcttgagtttgatttactaaccgctgctacacgactctacagtagt
agcagcacagagctcgtatccttacctggactgctgccgccagccggccgttgcctgccc
gtcccaacccacctgcccttctgcagcattctgggcaccaaccatttcagattaccgaat
tacctccgccacggcagtgaggcggaaattcgggcagctttgcatgagtgggaggggctg
cttgaatcgcagtgccatcgctacgtgaagtggtttgtctgcttgctcctgctccctggg
tgtagcgccttggtccctgtaacccccccgccgtgccagggcttctgcgaggccgtcaga
gacctgtgttggatgcacttggctggcggacgcctgcctctgccttgtgatgctctccct
gaggaggacgaagggtattcttgtgtctttattaatgcttctgcagagaacctgagcact
gaggtcagcctcctggagctgatcggagatcccccgccagaggagatcctcaaaatttat
ggccccgacaacaacccaggctatgtcttcggccccaatgccaacacaggccaggtggcc
cggtaccacctgccgagccctttctaccgggacttttccctcctgttccacatccagcct
actacgccccgggccggtgtgctctttgctgtcacggactcctcacagagcatcatctat
gtgggcatcaagctctcagagctgcgggcaggcaagcagcagatcatcttctactacaca
gagccaggctcaccaagctcatatgcagcagccaccttcaccgtgcccaccatgctcaac
cagtggacgcgctttgccatcagcgtggaggaggacgaagttgttctctacctggactgc
gaggagcacgagcgggtccgcttcgagcgctctccagatgagatggagctggaagatggc
tccgggctctttgttgctcaggctggaggggctgacccagataaatatcagggggtgatt
gctgatttgaagctgcaaggggacccgcgggcggccgagcggcagtgcgaggaagaggaa
gatgacactgaggaggtctctggtgattttggcagcggggcagaaggtggacaccaaccc
tcggggaaagacaggggtgtcccggggctggtggatgctgtcccagtcacctctccccct
gtggcagcgggtggcgggccgaggagaggtggaggctccccacagcaagctgagaggacc
agagcagaggacacactgcaagtctccacgggaggcactggccccaaaggtgaaaagggg
gagaagggcgagcgtggactgaaaggggactcagggactggcagcatcgtggggacgggc
agtgtcaagggtgaaaagggggagaaaggagaactaggcattaagggcagtgctggattt
ggctaccctggctccaagggccagaaaggggagccgggtgaccctggcccccccgggacc
ctctcgcggcattctgatggcttggtggtggagcaggtcactggtcccccgggtccacca
gggaaggatggagcccccggcagggatggcgagcccggtgatcctggcgaggatggcaaa
cccggtgatatggggccccaggggttccccgggatgccaggggagcctggtctgaagggg
gagaagggtgagccaggcatagggccgaggggaccccctggaccacctggtcccccagga
cccccaggaccatcatccaagcatgacaagctgactttcatcgacatggagggctctggc
tttggcggtgacctggagagcctgcggggtccgcgagggccacctggtcccccagggcca
cccggagtgcccggtttgccgggtgagccgggacggtttgggatgaaccacacagacctg
cagggaccgccagggctgccgggcagggatgggacccctgggtctccgggtcctcagggt
cctcctggaagagacggggcagctgggcagccagggcccaaaggagagcagggtgatgtg
ggtgaccttggcctccctggcgcaccaggacccaagggcagcaagggagaaacaggacca
gcaggagccccaggagaaatggggttagctggccttcctgggcccattggaccccgaggg
cagccagggccccccggtcccccagggccaccagggctgggctacgaggctggatttggt
gacatggagggctcggggctgccatttgctgccagctcccctggaccacctggacccgaa
ggaccacagggggtgccaggactgccgggggtgaagggggaggtcggcagccccgggcag
cctggcttgccaggaccaaagggagatactggtgtgcctggcgtggacggccgccctggc
ctggagggcttccccggaccacagggacccaaaggtgacagaggcagtcccggcgagaag
ggtgagcgaggccaagacggtgtggggctgcctggcccccctggtccacctggtcccccc
ggacaggtcatcgctgtctcaggcaaagataagtcttcggtggctttgcctggtccagag
ggcagacagggtcacgctggcttcccgggcccggtgggaccgaaaggagaccggggatcg
tccggtccccagggctccccagggttgaagggggagaagggggagcccggcgtcatcatc
agccccgatgggaccgtggtcactgcgcaggtgaaaggagaaaagggggagccagggctg
cggggaccgatgggaccatcgggtccgcagggacgagcagggatgaagggagagatcggc
tttccaggcagacccggacgtcctggcatgaatgggctgaagggcgagaagggtgacccc
gtggatgtcagtagcgtgctgggcttgcagggtcccccgggacccccagggcctccaggg
ccccctggaccacctggaagcatagcctatgacagcagcaatgccttcagcgactctggc
catcctgtgctgccagctttccctggtttccaccagtttccaggacaaaagggagagaag
ggcgatgccggagccccaggacccccaggccacttctcctatgacctgagtcactttggt
gccaacctgcagggtgacaagggggagccaggtcccaagggcgagaagggcgagccaggc
aacaccccactctatggtcccagcgtctccgggctgccagggcctccagggccccagggc
taccctgggctgccaggtcccaagggggacagtatcgttgggccgccagggcctcctgga
cctcagggcccccctggtattggatatgaggggcggcaaggcccccctggccctcccggt
ccccccggtcaaccctccttcccaggcccccacagacaagctatcagcatccctgggccc
cctggaccaccggggcctcccggaccaccaggcaccagcgggatgtcctttgggctgcgc
accctgccaacctaccaggcgatgctgagcgctgcacacgagctgcccgagggtggcctc
atcttcctgactgaccggcaagagctctatgtccgcctgcgtgggggcttccgccgcgtg
ctgctggaggagcacaccctgatccccagctcggctctggacaacgaggtgtatgacaag
ccccccagcattcactatgctggcccccagccccccctccagccccgtggacctctgcat
ccccttcacaaccacagcccactgcccaccgcccgcccctggcgtggggatgaggtagtg
gccaaccagcaccgcctgcccgagcaaccgctgctccaccaccagcatgagctcctcaac
agctactacatccaccgccggccagatccagcccccgtggccgcccacgtgcaccaggac
ttccagcctgctcttcacctggtggccctgaatgccccactgagtggtggcatgcgcggc
atccggggtgctgacttccagtgcttccagcaagcccgtcaggttgggctggctggcacc
ttccgcgccttcctctcctcccgcctgcaggacctctacagcattgtacgcagggccgac
cgcgccactgtgcctatcgtcaacctccgggacgaagtgctcttcagtaactgggaagcc
cttttcacgggcagcggggccccactgcaagccggcactcgcatcctctcctttgacggc
cgggatatcctgcaggatgcaggatggccgcagaagagcatttggcatggctcagatgcc
aagggccggcgcttgcccgagagctactgtgagacgtggcggacagaggagcgttctgcc
accggccaagcttcctcgctggcctccggcaagctgctggagcaggtggccagcagctgc
cagcatgccttcattgtcctctgcattgagaacagcttcatgaccgctgccaaaaagtga
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