Chroicocephalus ridibundus (black-headed gull): 134518794
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Entry
134518794 CDS
T10910
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134518794 (SMG8)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134518794 (SMG8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
134518794
NCBI-ProteinID:
XP_063198074
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All DBs
Position
7
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AA seq
992 aa
AA seq
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MRWSGWLPLPGGRSGTMPPPGGLAGAMAAAATAVGPVSLREMLLAVTAAAEGGGPVAGGD
EEVCVVGIFGKTALQLCSEKAALVSTVCDRQVFPLFPEEDPELEEGGPGQEGDLAAKDYN
QLQAYYSQENRVLYLVLTSICDTPQLLRACGDLAAAESRESGPGHPSGGPAPLPHAEAHE
FWKHQEKLHCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPSLKAAIKD
CPVGKEWKLNCRPCPPRLLFLFQLNGALKVDPPPARGQDPCGHLEKPPPKKHSPKRRLQH
ALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVAGGPQDGDDPVAMLLDQLRSNCT
MRETDSLLAPTLSGPRRYQMMRHGRQQLSFHAESTSSSSSSSGQLVDCTLKEFLWQHVEL
VLSKKGFDDSVGRNPQPSHFELPTYQKWVAAALKLYEVTIEGKDDDPTSLTGELSSKIMS
SIKVLEGYLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHAR
GPAFHKYAMQLNEDCYKFWSNGHQLCEERSLTDQHCVHKFHLLPKAGEKPEADRNPPVLY
HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQMLEEKCCGKLEHINFPVFQPSTPDP
APARDESSPAPPEGEIEKLKEKEPQTQGESTGLSLALSLGQSTGSLGAYPPDAQGGGDNA
ESHGQSGDSKSEKRPSLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKAYNF
HTGLDQQGFIPGTNYLMPWDIVIRTRTEDEGDLDTNSWPAPNKAVPGKRSAVVMGRGRRR
DDIARAFVGFEYEDARGRRFMCSGPDKVMKVMGGGPKESAIKALNSDMPLYILSSTQGRG
LKPHYAQFMRLFVVVPDAPLQITLTPQVQPGPPPCPVFYPEKQEITLPSDGLWVLRFPYA
YVTERGPCFPPKESQQLMSYKVLRGILKAITQ
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggtccgggtggctgccgcttccgggcgggcggagcgggaccatgccgcctccc
ggcgggctggccggggccatggcggcggcggcgacggcggtggggcccgtcagcctgcgg
gagatgctgctggcagtcacggccgccgccgaggggggtggcccggtggcgggcggcgac
gaggaggtgtgcgtggtgggcatcttcgggaaaacggcgctgcagctgtgctcggagaag
gcggcgctggtgagcactgtgtgcgaccggcaggtctttcccctcttccccgaggaggac
cccgagctggaggagggcggcccggggcaggagggcgacctggcggctaaggactacaac
cagctgcaggcctactacagccaggagaaccgggtgctgtacctggtactcacctccatc
tgcgacacgccgcagctgctgcgggcctgcggggacctggcagcggccgagagcagggag
agcggccccggccacccctccggtggcccggccccgctgccacatgccgaggcccacgaa
ttctggaagcaccaggagaagctgcactgcctgagcctcctctacctcttctccgtctgc
cacatcctgctgctggtgcatcccacctgctccttcgacatcacctacgaccgcgtcttc
agggcgctggatgggctgcggcagaaggtcctgccctccctgaaggctgccatcaaagac
tgccccgtcggcaaggagtggaagctcaactgcaggccgtgccctccgcgtctcctcttc
ctcttccagctcaacggggccctgaaggtggatccccccccagccaggggccaggacccc
tgtggtcacctggaaaagcctccccccaagaaacactctcccaagaggaggttgcagcat
gctctggaggatcagatctaccgcatcttccgcaagagcagggtgctaaccaaccaaagc
atcaactgcctgttcactgtgcctgctaaccaggctttcgtgtacattgtggctggtggg
ccccaggacggagatgatccagtggccatgcttctcgaccaactcaggagcaactgcacc
atgagagagacagactcgctgctggctcccaccctctcgggacccaggaggtatcagatg
atgcggcatggcaggcagcagctgtccttccatgcagagagcaccagcagcagctccagc
tcctctgggcagcttgtggactgcacccttaaggagttcttgtggcagcacgtggagctg
gtgctcagcaagaagggctttgatgacagcgtggggaggaacccacagccctctcacttt
gagctcccaacctaccagaagtgggtcgctgcagctttaaaactgtatgaagtgaccatt
gaaggcaaagatgatgacccaacctctcttaccggggaactgagctcaaaaatcatgagt
agtatcaaagtcttggaaggctatttagatatagacaccaagttctctgaaaaccgttgc
cagaaagctctccccatggcccacagcgcctatcaatccaacctgccccacaattacacc
atgacggtccataagaaccaactggcacaggccttgcgtgtgtacagtcagcatgcccgc
ggcccggcctttcataagtacgccatgcagcttaacgaggactgctacaagttctggagc
aacgggcatcagctttgcgaagagcgaagtttaactgaccagcattgcgtgcacaaattt
catctgctcccaaaagcaggggaaaagccagaagcagacagaaatcctccggttctgtac
cacaacagccgggctcgttccactggtgcctgtaactgtgggaggaagcaagcccctcgg
gatgatccctttgatatcaaagcagctaattatgacttttaccagatgctggaagaaaaa
tgctgtgggaaactggagcacatcaactttcccgtatttcagccaagcacacctgatccg
gcacctgctcgggatgagtcatcgcctgcccctccagaaggcgagattgagaaacttaaa
gagaaagaacctcagactcagggagaaagcacaggcctgagcttagccctcagcctgggg
cagtcgactggcagcttgggcgcttacccgcctgacgcccagggtggaggggacaacgca
gaaagtcacgggcagagtggggactccaaaagtgagaaaaggccaagcctggtagatcgc
caggcatccactgtcgagtacctccctgggatgctccattccaattgccccaaaggcctt
ttgcccaaattctccagttggtcactggttaagctggggcctgctaaggcttataacttc
cacacaggcttagatcaacaaggctttatcccgggaacaaactatttaatgccttgggac
attgtcatcaggacgagaactgaagatgaaggagacttggataccaattcctggcctgca
ccgaacaaggctgttcctggaaaaagaagtgcggttgtgatgggaagaggaagacggaga
gatgacattgctcgagcttttgtaggatttgagtatgaagacgcacgtggtaggaggttc
atgtgttcagggcctgataaggtcatgaaagtgatgggaggggggccgaaggaatccgcc
atcaaagccctcaattctgacatgccgctgtacatcctgtcgtcaactcagggacgagga
ctcaagccacattacgctcagttcatgagactctttgtggtggttcctgatgctccgctg
cagatcacattaacgcctcaagttcaaccagggccaccaccttgtcctgtattttacccc
gagaagcaggaaataacccttccatctgatgggctgtgggtgcttaggtttccttacgcg
tatgtgacagaacgtggaccctgctttcctcccaaagaaagccagcaattaatgagttac
aaagttctccgaggaatactgaaagcgattacacaataa
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