Chroicocephalus ridibundus (black-headed gull): 134519035
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Entry
134519035 CDS
T10910
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134519035 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crid03041
]
134519035 (PRPF8)
Spliceosome [BR:
crid03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134519035 (PRPF8)
Complex C
U5 SnRNP specific factors
134519035 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
134519035
NCBI-ProteinID:
XP_063198628
LinkDB
All DBs
Position
7:55668461..55688498
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPTPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcttcccgtaccgcggcggttgcgcgccggtgcccaccccgctggcgccg
ctgcccgactacatgtctgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaatttggcttcgtggacgcgcagaaggaggac
atgccccccgagcacgtccggaaaatcatccgtgaccacggagacatgaccaataggaag
ttccgtcacgacaagcgcgtctacctgggtgctttgaaatacatgcctcatgctgttctg
aagctcttggagaacatgcccatgccctgggagcaaatcagagatgttccagtcttgtac
catatcacaggcgccatctcttttgtgaatgagattccctgggtcatagagccagtgtac
attgctcagtgggggtcgatgtggattatgatgaggcgagagaagagggataggcgtcac
ttcaagaggatgagattccccccgttcgatgatgaagaaccccctctggattatgctgat
aacatcctggatgtggagcccctggaagcgattcagcttgagctggatccagaggaggat
gcccccgtgctggactggttctatgaccaccagccactgaaagacaacaggaagtatgta
aacggttcaacgtaccagcgttggcagttcactctcccgatgatgtccacgctgtaccgg
ctggccaatcagctgctcactgaccttgtggatgacaactatttctatttgtttgacctg
aaagcgttcttcacctccaaggcgctgaacatggctattcctggaggtcccaagtttgag
cctcttgtgagagacatcaatcttcaggatgaagactggaatgaatttaacgacatcaac
aaaattatcatcaggcagccgattaggacagagtacaaaattgctttcccgtacctgtac
aataacctgccacaccatgtccatctgacctggtaccacactccgaatgtcgtcttcatt
aaaacagaagatcctgatctcccagctttttacttcgatccactgatcaaccccatttca
cacagacattctgtcaagagtcaggaaccgctgcctgatgatgatgaagagtttgagttg
ccagagtttgtggaacctttcctgaaggataccccgctctacacagataacacagccaac
ggcattgccctgctctgggccccacggcccttcaacttgaggtctgggaggactcggaga
gctcttgatatcccactggtcaagaactggtatcgtgagcactgcccagcaggccagcca
gtgaaagtgcgagtctcctatcagaagctactgaaatattatgttctgaatgcgctcaag
cacagaccccccaaggcccagaagaagaggtacctgttccgctccttcaaggctacaaag
tttttccagtcgacaaagctggactgggtggaagttggcctgcaggtgtgtcgccagggc
tacaatatgctgaacttgctgatccacagaaagaatctgaactaccttcacttggattac
aactttaacctgaagcccgtgaagaccctcaccactaaggaaaggaaaaaatctcgtttc
ggtaatgctttccatctgtgtcgagaggttctgcggctgactaagttggtggtggacagc
catgtccaatacagacttggaaatgtggatgcatttcagttggcagatggcttgcagtac
atctttgcccatgtgggtcagctgacaggaatgtaccggtacaagtacaaactgatgagg
cagattcgtatgtgcaaggacctgaaacacctaatttactacaggtttaatacagggcct
gtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtatggctgttcttc
atgagaggcatcacgccactgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactcaaagggtgtagcaaaaactgtcacgaagcagcgtgtggagtctcac
tttgacctggagctgagggcagccgttatgcatgacattctggatatgatgccagaagga
atcaaacagaacaaagccagaaccatcctgcagcatctgagcgaggcctggcggtgctgg
aaggccaatatcccctggaaggtgccggggctgccaactcctattgagaacatgatcctg
aggtacgtgaaggcaaaagccgactggtggacaaatacagctcactacaacagggagcgg
atccgtcgaggtgccactgtggacaaaactgtctgtaagaagaatctgggccggcttacc
agactctacttaaaagctgagcaggaacggcagcataattacttgaaggatgggccttac
atcaccgcggaagaggctgttgctgtgtacacaaccacagtgcactggctggaaagcagg
aggttctcacccattcccttccccccactgtcctacaagcatgacaccaagttgctcata
ttagccctggagaggctgaaggaagcttacagtgtgaaatctcgcctgaatcagtcgcag
agagaggagttgggcttgattgaacaggcttatgataatcctcatgaagctctgtccaga
atcaaacgacaccttttaactcagagagccttcaaggaggtgggtattgagttcatggat
ctctacagccacttggttcccgtttatgatgttgagcccttggagaaaatcacggatgct
tatctggatcagtacttgtggtatgaggctgataagcgacgacttttccctccatggatc
aaacctgctgacaccgaacctcctccactgttggtgtacaagtggtgccaaggcattaat
aatctgcaagatgtctgggaaacaagtgaaggtgaatgcaatgtgatgctggaatctcga
tttgagaagatgtatgagaagatcgacctgacgttgctcaacaggctgttgcgtcttatt
gttgatcacaacatcgctgactacatgacagccaagaacaacgtggtcatcaactacaag
gacatgaaccacacaaactcctatggcattattcgcgggctgcagtttgcttccttcatt
gtccagtattatgggcttgtgatggacctgctggtgctgggtctgcaccgcgccagtgaa
atggctgggcctccccagatgccgaatgacttcctcagcttccaagacattgccactgag
gtggcccatcccattcgcctcttctgcagatacatcgaccgtattcacatcttcttcagg
tttacagcagatgaggcaagagacttgattcagcggtacctgacagagcatccagatccc
aacaacgagaacattgtaggctacaacaacaagaagtgctggccccgggatgctcggatg
cgcctcatgaaacacgatgtgaaccttggtcgtgctgtattctgggatatcaagaaccgc
ttgcctcgatcagtcaccacagtgcagtgggagaatagcttcgtatccgtttacagcaag
gataaccccaatttgctgtttaacatgtgtggttttgagtgccgcatcttgcccaagtgc
cgcaccagctatgaggagttcacccacaaggatggtgtctggaacttgcagaatgaggtc
accaaggagcgcacagctcagtgcttcctgcgtgtggatgatgagtctatgcagagattt
cataacagagtgaggcaaatcctcatggcatctggctctacaaccttcactaagattgtc
aataaatggaatacagctctgatcggcttgatgacatatttccgggaagctgttgtaaat
actcaggagttgcttgatttgctggtgaagtgtgaaaataaaatccagactcgaatcaaa
attggtctgaattccaaaatgcccagccgttttccaccggtggtgttttacacccctaaa
gagctgggagggctgggcatgctctccatgggccacgttctcatcccgcagtctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcaggaatgagtcacgag
gaggaccagctcatcccaaatttgtatcgttacatccagccatgggagagtgaatttatt
gactctcagagagtgtgggcagagtatgccctcaagcgacaagaggccatagcccagaac
aggcgtctgactctggaggatctggaggactcatgggacaggggaattcctcgtattaac
acccttttccagaaggaccgacataccctggcttatgataaaggatggagagtcaggact
gacttcaaacagtatcaggtcctgaaacagaacccgttctggtggacacatcagcgccac
gatgggaaactctggaacctgaacaactaccgcacagatatgatccaggcacttggcgga
gtggaagggatcctggaacacactctcttcaagggcacttacttccccacgtgggagggt
ctcttctgggagaaggccagcggctttgaggagtccatgaagtggaagaagctgacaaat
gcccagaggtcgggtttgaaccaaattccaaacagaagattcaccctgtggtggtctcct
accattaacagagccaacgtatacgttgggtttcaggtgcagctggatttgacaggcatc
tttatgcacggcaagatccccacgctgaagatttctctcattcagattttccgagctcac
ttgtggcaaaagatccatgagagcattgtaatggatctgtgtcaggtatttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacgatccatcccaggaagtcatac
aagatgaattcctcgtgtgcagatatccttctttttgcttcctataagtggaatgtgtca
cgtccatcattgcttgcagattccaaagatgtgatggacagcaccaccactcagaagtac
tggatagatatccagctgcgctggggagattacgattcccatgatatcgagcgctatgca
agagccaagttcctggactatactaccgacaacatgagtatctatccgtctcctactggt
gtgctcattgccattgatctggcctataacttgcacagtgcttatgggaactggtttcct
gggagcaaacctctgatccagcaggctatggccaaaatcatgaaagcaaatcctgcgctg
tatgtgttgagagaacgaatccgcaaggggttgcagctgtactcgtctgagcccacagaa
ccatacctttcctcccagaactacggcgagctcttctccaaccaaatcatctggtttgtg
gatgacaccaatgtctacagagtgaccattcacaagacttttgaagggaatttgaccaca
aaacccatcaatggagccattttcatcttcaatcccagaacaggacagcttttcctgaag
atcatccacacgtctgtgtgggcgggacagaagcgtctaggacagctggccaagtggaag
actgctgaagaagtggctgccttgattcgatctcttcctgtggaggagcagcctaagcag
atcatagtgacgcggaagggcatgttggacccacttgaggtacacttgctggatttcccc
aatattgtgatcaaaggctcagagttgcagctgcccttccaggcctgtctgaaagtggag
aagtttggtgatctcatcctgaaggctactgaaccccagatggttctcttcaatctctat
gatgactggctgaagaccatctcttcctacacggcattctctcgtctgattctgattctc
cgggcactacatgtgaataacgatcgagccaaagtcattctgaaaccagataagacaacc
ataacggagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatcctcgctgactatggcaagaagaacaatgtgaacgttgca
tccctgacacagtcagagatccgagacatcatcctgggcatggagatctctgccccctct
cagcagagacagcagatagcagaaattgagaagcaaaccaaggaacagtcacagctgacg
gccacgcagacccgcactgttaacaaacacggggatgaaatcatcacctctacaaccagc
aactacgaaacccagaccttctcctccaagactgagtggcgagtcagagcgatttctgct
gccaacctccacctgcgaacaaaccatatttatgtttcatcagacgatataaaggaaaca
ggctacacgtacattcttcccaagaacgtgttgaagaaattcatctgcatctcggatctg
cgggcccagatcgcaggttacctgtatggagtgagccctcccgataacccccaggtgaag
gagatccggtgcattgtgatggtgccccagtggggaacacaccagactgtgcatctcccg
gggcagctgccgcagcatgaatatctcaaggaaatggaacctctggggtggattcacacc
caaccaaacgagtcccctcagctctcgccacaggatgtcaccacccatgccaaggtcatg
gctgacaacccctcttgggatggggagaagactatcatcatcacctgcagctttacaccg
ggctcctgcacactgacagcctacaagctgaccccgagcggctacgagtggggcaggcag
aacacggacaaagggaacaaccccaagggctacctgccgtcccattacgagagggtgcag
atgctgctgtcggatcgcttcctcggcttcttcatggtcccagcacaagggtcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttctaccacgaggtccatcgcccttctcacttcctcaacttcgccctgctg
caggagggggaggtctactccgccgaccgggaggacctctacgcctag
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integrated database retrieval system
