KEGG   Chroicocephalus ridibundus (black-headed gull): 134519360
Entry
134519360         CDS       T10910                                 
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
  KO
K10897  partner and localizer of BRCA2
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03440  Homologous recombination
crid03460  Fanconi anemia pathway
Brite
DNA repair and recombination proteins [BR:crid03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA complex
     134519360 (PALB2)
   FA (Fanconi anemia) pathway
    Downstream FA components
     134519360 (PALB2)
SSDB
Other DBs
NCBI-GeneID: 134519360
NCBI-ProteinID: XP_063199496
LinkDB
Position
8:49879998..49891510
AA seq 1398 aa
MAARLPWTRASRGRPLWRDWRPWKERRLLRDRGRRRRPAGRPSAAPRRRRCGARRGTERG
PARRCQPQPGALCLAAEGEAGAAEEGVQRDRQPAAAGAASRASPEPRPGHGGGRRPVGAE
PCRSAALPDPDCSRDNVSPSADKHGTSQLQTKTCSDPGTEKKTPVAFKHAPEFSDNEISL
SGSSQAESIQPSQENLCCGIVRPAPEEKKPKTSRSLMKLRRRAKAPVSEERESVHDGPLI
NSDEMVKNQIANTKELRSPVFRRSSVLNIEENTQRVSSPALVGREENSFTPPSAALGVVQ
DVLGDSVPLEVPELFLGALRDSSDVWQPESPGAEAISDNCEPAQPCSENGDSVLLDISAD
GGNESSSIIKQTDSESMCEDRGELHRLLDLMSENEVLPANGNNTVSNESKSHEGNQSDTN
SLNPSPTDLALGNVEELLENQQLEIQSRLPHTEKVTAPESTLNSCTVVEGLLFPVEYYIR
TTRRMSNCQRKVDLDAVILSQLGRSKKGQRSKCKQKDANLDWHSQERVENDSESGVVPSP
FLGAENDSANSSTQKSLAASSGSSTSLGSISQSSITSTKQDQRRSQRKQKGRRKSTRKPS
VHQVSQELIESLDLIPPRESSSLLSNERQTEKENREANLEKSSSDERRLSAAAALGSGET
EVAGAIQPTSSDPPPGGSQVLGKCHKTLLEQVQNPLQNKDSLNPGNETFASHIGDLEANL
GVCQGDKHPVEHVKNQYVQGACRAEELLAINVPLRRSLRSSARQRASQVSKDESKRRRSY
PVRSGDPASLRLPATDPDTCSSLFCFRSPQWLAPRLGIRDFHLPDEEFGLLKLEKLESSP
VNDLEVFVPNTFGDGAASGDSQDAEMNPEEKRLKSNLISPFKNGSPKLPHVESPASKKEL
STHALFLTPMGTVLAGAPTQPESQISSSVFPVVGATPAILPSVCSEVFPSTPSVSPSQAN
PRFSRGASAQVVDDGECKDSAVPLHLDSCGAGSARKEEEQSTTFNLEAPHNESDEAVALE
KHQQSESKQQRSCRASPEQKKDVAEQMTPVLFDGLREESLQLVSKLKDSSSSCAVDVSTV
WWEAAGWRELCVVTACESSVSLWKPLASDHWGKVYTWQVGEIPVIQIVPLPDACNLVCIA
LGDLEIGEIRLLLYSSENDLFKQSLVKTGNIKAVLGIKDRRLVSSSRTVQEQQVEIVSLS
ETGRCKDGQTLMPPEETVLAFAEVEGARDALVGTTAVNSIVVWNLKTGQLLKKMHVGYSY
PASICHRAYSDSGLLFVVLSHPHAKESESCGNPAFRVVAFNPKTARSTGVMFSSLPPGHA
GRYLEGDVKDASAAAVLTSGAIAVWDLLLGQCTALLPPDPEGSWALARWATTSACLLAGQ
RDGTVCLYQYQQPQPGVA
NT seq 4197 nt   +upstreamnt  +downstreamnt
atggcggcccggttgccatggacacgcgcttcccgcgggaggccgctatggagggactgg
cggccatggaaggaacggcggctgctgagggaccgggggaggcggcggcggccggcgggg
aggccctcagcggcgcccagaaggagaaggtgcggtgcccggcgcgggaccgagcggggc
ccggcgcgacggtgccagccccagcccggtgcgttgtgtcttgcagctgagggagaagct
ggcgctgctgaggagggagtacagcgagaccgtcagccggctgcggcgggcgcggcgagc
cgagcgagtccggagccacggccggggcacggcggaggaaggaggccagtgggagcggag
ccctgcaggtctgcagcgctccctgatcccgactgttctagagataacgtatctcctagt
gctgacaaacatggaacctctcagttacagactaaaacctgctctgatcctggcacagag
aagaaaacacctgttgcatttaaacacgctcctgaattctctgacaatgagattagcttg
tcaggcagctcgcaggcagaaagcatacagcctagccaggaaaacctgtgctgtggaatc
gttaggcctgcccctgaggagaaaaaacccaaaacctccagaagcttgatgaagctgagg
agacgggcaaaggctccagtatcagaggaaagggaatcagtgcatgatgggcctctaatc
aacagtgatgaaatggtgaagaatcaaattgccaataccaaggaacttcggtcaccagtc
ttcaggcgaagcagcgtcttgaacattgaggaaaacactcaaagagtatccagcccagca
cttgtggggagagaagaaaacagtttcactcctcccagtgcagcgttaggagtcgtccaa
gacgtgcttggagacagtgtccctctagaagtgcctgagctgttcctgggtgcgctgagg
gacagcagcgatgtctggcagcctgagtccccaggtgctgaggccatatctgataactgt
gagcctgcacagccatgttcggagaatggtgactctgttttacttgacatcagtgctgat
ggaggaaatgaatcttccagtataataaaacaaacggacagtgagagtatgtgtgaagat
cggggagaattacataggctcttggatttgatgtcagaaaatgaagtattgcctgccaac
ggaaataacactgtatctaatgagagcaaaagccatgaaggaaatcaaagtgacactaat
agcttaaatccctctcctacagatcttgcgctgggcaatgttgaagaactgttggagaat
caacagcttgaaattcagtcaagacttcctcatacagaaaaggtgacagctcctgaaagt
acattgaactcttgcacagtggttgaagggcttctctttccagttgagtactacatcagg
acaactcgacgcatgtctaattgccagaggaaagtggatcttgatgctgtaattctcagc
cagctgggcagaagcaagaaaggtcagcgaagtaagtgcaagcagaaagatgcaaattta
gactggcactcccaagaaagagttgaaaatgattcggagtcaggggttgtgccgtcccct
tttcttggtgctgaaaatgattcagcaaattcaagtactcagaaatctcttgctgcgtcc
agtggtagcagcacgtcacttggatcgatttctcaaagcagtatcactagcacaaagcaa
gatcagagacgatcgcagaggaaacaaaagggaagaagaaagtctacccgcaaaccctct
gtgcatcaagtgtcacaggaactcatagagagtttggatctcataccaccgagggaaagc
agtagtctgctgtcaaatgagcgtcagactgaaaaggaaaaccgtgaggctaatcttgaa
aagtcatcttcagatgagagaaggttgtctgctgctgcagctcttgggtctggagagaca
gaagtggccggcgctatacagccaacgagttctgatcctcctcctggaggaagccaagtg
cttggcaaatgccataagactctgttagaacaggttcaaaatccgcttcagaacaaggat
tctctgaacccaggaaatgaaacttttgccagccatataggagatctggaagccaactta
ggtgtgtgtcagggtgataaacatccagtggagcatgttaagaatcagtacgtgcaagga
gcctgcagggctgaggagctcctagcaattaatgtccctctgcgtcgctccctgcgttcc
tctgcaagacagagagccagtcaagtctcaaaagatgagagcaaaagaagacgtagctat
ccagtgcgttcaggggatcctgcttctcttcgcctccctgctacggaccctgacacttgc
agctctctcttctgctttcgcagtccccagtggctggcccccaggctgggaatcagagac
tttcacttaccggatgaggaatttggactactaaaacttgagaaattagaatcttcccct
gtgaatgacttggaggtttttgttcctaatacgtttggagatggtgcagcttcaggggac
tcacaagatgcagaaatgaatccagaagaaaaaaggctcaaaagtaatttgatttcacct
ttcaaaaatggatcacccaagttacctcacgtagaaagcccagcttccaagaaagaactt
tccacccatgctttgttccttactcccatggggactgtcttagctggtgctcccactcag
cctgagtctcagatttcctcatctgtttttcctgttgtgggtgcaaccccagccatttta
ccatcagtatgcagtgaggtcttccccagtacaccttccgtatctccctcacaagcgaac
ccacgtttctccagaggggcatctgcccaggtcgtggatgatggggaatgcaaagactct
gccgttccactgcacttggacagctgtggtgcaggatctgctagaaaagaggaggaacaa
agtacaacatttaatttagaagctccccataatgaatctgatgaggctgtggccttggag
aagcatcagcagtcggagagcaaacagcagagatcctgcagggcttctcctgagcagaag
aaagatgtggcagaacagatgactccggtactgtttgatggcctcagagaagagagcttg
cagcttgtatcaaagctaaaggattcttcaagttcctgtgctgtggacgtgagtaccgtg
tggtgggaagcagctggctggagagagctgtgcgtggtgactgcttgtgagagttctgtc
tccttgtggaaacctctggcatctgaccactggggaaaagtctatacttggcaggttgga
gagattcctgtaatacagattgttcctctgccggatgcctgtaatcttgtgtgtatagca
ttgggagatttggagattggagaaataaggctcttgctttattcctctgagaatgactta
ttcaagcaatcactagtaaaaactggaaatataaaagctgttcttgggataaaggatagg
aggctggtcagcagcagcaggaccgtgcaagagcagcaagtggaaatagtgtcgctttca
gagacgggaaggtgcaaggatggacagactttgatgccccccgaagaaactgttttagct
tttgctgaagtagaaggagcgagagacgccttggttggcaccactgcagtgaacagcatt
gttgtttggaatttgaaaacgggccagctcctgaagaagatgcacgttggttattcctac
ccagcttccatctgccatcgagcatattccgactctggacttctgtttgttgttttaagt
catccccatgccaaagagagcgagtcctgtggaaaccccgcgttccgcgtggtagcgttc
aaccccaaaacagccaggagcacgggggtgatgttctcctccctcccacctggccatgct
ggaaggtacctggagggtgacgtgaaggatgcttcggccgcagccgtgctgacgtcggga
gccatcgcggtgtgggacctgctgctggggcaatgcacagcgctgctgcccccggaccca
gaggggagctgggcgctggcccgctgggccaccaccagtgcctgcctgctggccgggcag
cgggatgggaccgtctgcctctaccagtaccagcaaccccagccaggagtggcctga

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