Chroicocephalus ridibundus (black-headed gull): 134519862
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Entry
134519862 CDS
T10910
Symbol
PTCH2
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 2
KO
K11101
patched 2
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
134519862 (PTCH2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
134519862
NCBI-ProteinID:
XP_063200645
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All DBs
Position
8:11612178..11634857
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AA seq
1442 aa
AA seq
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MGAAAAAAANGSGGGGAAPAPPAPXLPFRGAAGGRRHTALRTGTAPRPHRPRRRLLRSHG
GRRPRPHITGCPAPPAAPAMPAEPPRSAPPSLRAARRKPLPEGRAVGQRAPLWLRARFQA
LLFALGCRIQRHCGKVLFVGLLVFGALAVGLRVASIETDIEHLWVEAGSRVSQELRYTKE
KLGEESVYTSQMLIQTPKRDGENILTQEALQLHLEAALAASKVQVSLYGKSWDLNKICYK
SGVPIIENGMIERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWSNLDPLQLM
EELGQFTSLEGFKELLDKAEVGQAYMERPCLDPRDPQCPPSAPNKQSQQSPDIPAELSGG
CHGFSRKFMRWQEELILGGTTKDSQGKLLRRSQRGACLSPSAEALQTMFLLMSPRQLFEH
FKDDYEIHDISWSEEKAGAILEAWQRKFVELAQDSIPSNATQNVHAFSTTTLNDIMKSFS
DVSVIRVAGGYLLMLAYACVTMLRWDCSKSQGAVGLAGVLLVALSVASGLGLCSLLGISF
NAATTQVLPFLALGIGVDDMFLLAHAFTETSQHIPFKERTGECLKRTGTSVALTSVSNMI
AFFMAALVPIPALRAFSLQAAVVVVFNFAMVLFVFPAILSLDLYRREKRRLDILCCFYSP
CSSRVIQIQPQELADANDNHACHPSPYGHPSVATSTQITTTVQAFTRCDPSGHHVVTVLP
PTSQVCTSPAVLLPPTDPLGSQVFTPSSSTRDLLAQLDEAKGGRECVPLPFCRWSLADFA
REKYAPLLLRTRTKAVVAVLFLALLGLSLYGTTMVHDGLYLTDIVPRDTKAHAFISAQFK
YFSFYNMFIVTKGGFHYPGAQAALLSLHQAFSTVKYVVREGNRDLPKMWLHYFQDWLRGL
QATFDRDWQAGRITHDSYRNGSEDGALAYKLLIQTGNKKEPFNFNQLTTRRLVDENGIIP
PDTFYICLTVWASNDPLGFAASQANFYPPPPEWIHDKYDTTGENLRIPAAQPLEFAQFPF
YLSGLRRTADFVEAIESVRAICREAAQRHGVLSYPSGYPFLFWEQYIGLRHWFLLAISIL
LACTFLVCALLLLNPWTAGIIVSILAMMAVELFGIMGLMGIKLSAIPVVILIASVGIGVE
FTVHVALGFLTAAGSRNVRSAAALEHTFAPVMDGAVSTLLGVLMLAGSEFDFIMRYFFAV
LTILTLLGLLNGLVLLPVLLSVIGPPPEASPVENGPRLPPPEPVPPCLGPGGLYVRRAPA
WPAAFPDPSDAERYAEAVGPGSPRGPFIVPPAPAHILLEAGKDPSFPRITVLKPYKDSPE
VQGKKEAPGSQPAPPLSFGEPCPTPQPCPPGARPAPPAALPAYSTHLQGPAGSYTTVTAT
ASVTVALHPTLPGSYPSFGPEGFTSGEHDCLEEPSVASTGGTAVPDAFEMQSMGRHGTGT
RR
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctgccgcggcggcggcggccaatgggagcggcggcggcggcgcggccccggcg
ccccccgcccccngcctcccctttagaggcgcggcgggcggccggcggcacacagccctc
cgcaccggcaccgcgccgcgcccgcaccggccccgccgccgcctcctccgctcgcatggg
ggccgccgccctcggccccacataacggggtgcccagccccgccagccgcccccgccatg
ccggccgagcccccccgctccgccccgccgtcgctccgcgccgcccgccgcaagccgctg
cccgagggcagggccgtgggccaaagggctccgctgtggctgcgggcccgctttcaggcg
ctgctcttcgccctgggttgccggatccagcggcactgcgggaaggtgctcttcgtgggg
ctgctggtgttcggggcgctggccgtggggctgcgggtggcctccatcgagaccgacatc
gagcacctctgggtggaagccggcagccgagtgagccaggagctgcgctacaccaaggag
aagctgggcgaggagtccgtctacacctcccagatgttgatccagaccccgaagcgggat
ggggagaacatcctgacgcaggaggccctgcagctccacctcgaggcggccctggccgcc
agcaaagtccaagtctcgctgtacggaaaatcgtgggatttgaataagatctgctacaag
tcgggtgtccccatcattgagaacggcatgatcgagaggatgatagagaagctgttcccc
tgtgtgatcctgacgccgctggactgcttctgggaaggcgccaagctgcagggaggctca
gcgtacctcccgggccgcccggacatccagtggagcaacctggaccctctgcagctgatg
gaggaactggggcagttcacatccctggaaggcttcaaagagctgctggacaaggcagag
gtggggcaggcttacatggagcggccgtgcctggacccccgggacccccagtgccccccc
agtgcccccaacaagcagagtcagcagagccccgacatcccagctgagctctcggggggc
tgccacggcttctccaggaagttcatgcgctggcaggaggagctgattctaggcggcaca
accaaagactcccagggcaagctgctacgccggtcccagcgaggtgcgtgcctgtccccc
agcgccgaggccctgcagaccatgttcctcctcatgagcccccggcagctctttgagcac
ttcaaggatgactacgagatccatgacatcagctggagcgaggagaaggcgggcgccatc
ctggaggcctggcagaggaaattcgtggagctggcacaggactccatcccgtccaatgcc
acgcagaacgttcatgctttctccaccaccacgctcaacgacatcatgaagtccttctcc
gacgtcagcgtcatccgggtggctgggggctacctcctcatgctggcctatgcctgtgtc
accatgctgcggtgggactgctccaagtcccaaggggccgtgggcctggccggggtcctg
cttgtggctctctccgtggcctctggcctggggctttgctcactgctgggcatctccttc
aatgcagccaccacccaggtcctgcccttcctggccctcggcatcggtgtggatgacatg
ttcctcttggctcatgccttcactgagaccagccagcacatccccttcaaggagcggacg
ggcgagtgcctgaagcgcacggggacaagcgtggctctcacctccgtcagcaacatgatc
gccttcttcatggcagccctggtgcccatccctgccctgcgtgccttctccctccaggct
gcggtggttgtggtgttcaactttgccatggtgctattcgtcttccctgccatcttgagc
ctggacctgtatcgccgggagaaacgccggctcgacatcctctgctgcttctacagccct
tgctcctcacgggtcatccagatccaaccccaggagctcgccgatgctaacgacaaccat
gcctgccacccctccccttatgggcaccccagcgtggccaccagtacccagatcaccacc
accgtgcaagccttcacccggtgtgacccctcgggccaccacgtcgtcaccgtcttgcca
cccacctcccaggtgtgcacctcgcccgctgtcctcctgccccccactgaccccctgggc
tcgcaggtcttcaccccatccagctccacccgggacctgctggcccagctggatgaggcc
aagggtgggcgggaatgcgtccccctgcccttttgccgctggagcctcgccgacttcgcc
cgggagaaatacgccccgctcctcctgcggacccggaccaaggcggtggtggcggtgctg
ttcctggcgctgttggggctgagcctctacggcaccaccatggtgcacgacgggctctac
ctgacggacatcgtgccgcgggacaccaaggcacatgccttcatctcggcccagttcaag
tacttctccttctacaacatgttcatcgtcaccaagggcggcttccactacccaggcgcc
caagccgccctgctcagcctgcaccaggccttcagcaccgtcaagtacgtggtgcgggag
ggcaaccgcgacctgcccaagatgtggctccattacttccaggactggctgcgagggctc
caggccaccttcgacagggactggcaagctgggcgcatcacccatgacagttaccgcaac
ggctccgaggacggggcgctggcgtacaagctcctaatccagactggcaacaagaaggag
cccttcaacttcaatcagctgaccacgcggcggttggtggacgagaatggcatcatcccc
cctgacaccttctacatctgcctgacggtgtgggccagcaacgaccccctgggcttcgcc
gcctcccaggccaacttctaccccccgccgcctgagtggatccatgacaagtatgacacc
acgggcgagaacctgcgaatcccggcagcccagccgctggagtttgcccagttccctttc
tacctgagcgggctgcgtcgcacggccgacttcgtggaggcgatcgagagcgtgcgggcc
atctgccgggaggccgcccagcgccacggggtgctgagctaccccagcggctaccccttc
ctcttctgggagcagtacatcggcctgcgccactggttcctgctggccatcagcatcctg
ctggcctgcaccttcctcgtctgcgccctgctgctgctcaacccctggacggccggcatc
atcgtctccatcctggcgatgatggcggtggagctgtttggtatcatggggctgatgggc
atcaagctgagcgccatccctgtggtcatcctcatcgcctcggtgggcattggtgtggag
ttcaccgtccatgtggccctgggcttcctgacggccgcggggagcaggaatgtgcgctcg
gctgcggcgctggagcacacattcgcccccgtgatggacggtgccgtctccaccctcctg
ggtgtcctcatgttggccggctccgagtttgacttcatcatgaggtacttctttgctgtg
ctcaccatcctgacgctgctggggctgctcaacgggctggtgctgctgccggtcctgctc
tccgtcatcgggccaccccctgaggcatccccggtggagaatggcccccgcctgccccct
ccagagccagtgcccccgtgcctgggccctggggggctgtatgtgcggcgtgccccagcc
tggcccgctgctttcccggacccttcggacgcggagcgctacgcagaggcggtggggcca
ggcagcccgcgggggcccttcatcgtgccccccgccccggcacacatcctgctagaggcc
ggcaaggaccccagcttcccccgcatcaccgtgctaaagccctacaaggacagcccggag
gtccaggggaagaaggaggctcccggctcgcagcctgcaccccctctgtccttcggggag
ccgtgccccacgccacagccctgcccgccgggtgcccggccagccccccctgcagccctg
cccgcctacagcacccacctgcagggtcccgccggcagctacaccaccgtcacggccacc
gcttctgtgacggtggccctgcaccccacgctgcctggctcctaccccagctttggccct
gagggcttcaccagtggcgagcacgactgcctggaggagcccagcgtggccagcaccggt
ggcaccgccgtgcccgacgccttcgagatgcagagcatgggacgccacgggacaggcacc
cggcgctag
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