Chroicocephalus ridibundus (black-headed gull): 134520170
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Entry
134520170 CDS
T10910
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
134520170 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
crid01001
]
134520170 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
crid04054
]
134520170 (CIITA)
Enzymes [BR:
crid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
134520170 (CIITA)
Protein kinases [BR:
crid01001
]
Serine/threonine kinases: Other
TAF1 family
134520170 (CIITA)
Pattern recognition receptors [BR:
crid04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134520170 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
NB-ARC
NPHP3_N
nSTAND_NTPase5
LRR_6
Silic_transp
nSTAND3
RsgA_GTPase
AAA_16
AAA
Motif
Other DBs
NCBI-GeneID:
134520170
NCBI-ProteinID:
XP_063201266
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All DBs
Position
8:45366139..45409762
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AA seq
1081 aa
AA seq
DB search
MLTEWIFLILLKQFRFCSDLLQTSSDAGMNLFKEILPRVRNILSTATASDDRALLNLMLK
EDVISKEYHQALLHEKDREDLARKISLTFMEKWDLYLNTLVPLCCLNLCGSKPQNMTDNE
PTGSKYISDSKRQIMDSAFVPESGCLDLLHSDTYPLHLYTLLDPKLSGNEEGDFSADPDV
DASNYDQFNNMDFLCTMENAENVDEWYLCSNTREAYARIAELAEYVLKDQQEKQVEDTFA
GSLLDEMATENTEKFTDIKVQKCHKRTFLGSAEGCSEASEPKYKKIGSSALECLPAGVKG
SQENTGFADPPQQILNFVLGNGTSDVIIYPMLTSSTQTLISPSFPVSLCGLEMFKEVRVP
IISSEETFKRPKSVEAFCISLMDYFQDVCKSVAMEREVTLDHLFIDGTFVQSQTETKTGK
NSIKAMEKELVTCGLQGKEKAALKRSQIFQIPGGKDSETKVIVVLGKAGMGKSILVQKIC
QDWSNGEFSQFEFAFWFDCKQISLPEKRYSLKDLLLEFFVKPQEGSKEIFEYILQNPTKV
LLLFDGFEGLHDHENFPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLLTARPKDKVY
QYVSKVDKTIEIVGFSPQQRELYITKYFEGLPYCDNALKLIKECEYLFSHCYSPLMCRFV
CFLCETVLEMGDKSLPSTLTTVFLKFVQQKIISMKTDVTAMQNQESLATLARIAWYLGEK
HQNAVKSNLLPSKEVKEFALKHGFFLPFAFPRHSDSEEEEFGSTFSDFVIQNFLGALHLM
LAEEIKDKSLIKYLSFPSKKKKPYNWLDLVPRFLAGLLFLQDDPYFCSLSNEDVKQSTKK
QKTLLKYIRRLQINELCPERLLDLLHCIYETQSNYLLQHVALRLKTDLSFLGVVLTPPDV
HVLHYILKRSRKEFSLDLWNSSIDMQGLKDLVGLKNVASFRASLSDTVRLWKSLEQTKDY
ELLRASTEKFVLDPFKAKTMKDISDLSDLVEMQEKMINCVQDASGCSSYEIPAIKNLRKL
EFALGPVCGLQGFLKLVEILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLEIL
K
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgctgactgagtggatttttttaattctattgaaacagttcagattttgctcagacctc
cttcaaacgtcttcagatgcaggtatgaatctctttaaggagatcttacctagagtaagg
aatattctttcaactgctacagcttctgatgaccgcgcattgcttaacctcatgttgaag
gaagatgtgatatccaaggagtaccatcaagccttgctccatgaaaaagacagagaggac
cttgcaaggaagatatctctgacctttatggaaaaatgggacctgtacttgaacactttg
gttcccctctgttgtttaaacctctgtggcagtaagcctcaaaacatgacagataatgag
ccaacaggaagcaagtacatttctgacagcaagagacaaatcatggattcagcatttgtg
cctgaaagtggctgtcttgatttgctgcacagtgatacttatccattgcatctgtatact
ctccttgatccaaagttatctggaaatgaagagggtgacttctctgcagatcctgatgtt
gatgccagcaactatgatcagttcaataatatggatttcctgtgtacgatggaaaatgct
gaaaatgtggatgaatggtatctctgttccaataccagagaagcttatgctagaatagct
gaattagcagaatatgtgctcaaagatcagcaggagaagcaggtggaagacacttttgca
gggagccttttggatgaaatggctactgaaaacactgagaaatttaccgacataaaggtg
cagaaatgtcacaaacgaaccttcttaggctctgcagagggttgctctgaagcttcagaa
cccaaatacaagaaaattggatcttcagcgctggagtgtctacctgccggcgtgaaaggg
agccaagagaatacaggctttgcagatcctcctcagcagatacttaacttcgttcttgga
aatggcacatctgatgttataatatatccaatgctgacttcttccacccaaacattgata
tccccaagttttccagttagtttatgtggtttagaaatgttcaaagaagtccgcgttccc
ataatttcttctgaagaaactttcaaaagaccaaagtcagtggaagctttctgtatatca
cttatggattatttccaagatgtgtgcaaatctgtggccatggagcgtgaagtaactctt
gatcacctgtttattgatggaacatttgttcaaagccaaactgaaaccaagactgggaag
aatagcataaaagcaatggaaaaggagctggtaacttgcggtctgcaagggaaggaaaag
gcagcccttaaaagaagccaaatatttcaaatcccaggaggtaaagactcagagactaaa
gtgattgttgtgctgggaaaagcaggaatgggcaaaagcattcttgttcagaagatctgc
caggactggtccaatggagagttttctcaatttgagtttgcgttttggtttgactgcaaa
caaataagcttgcctgagaaacgatacagcctgaaggatctgcttcttgaattttttgta
aaacctcaagagggaagcaaagagatctttgagtatatattgcaaaatcctactaaagtc
ctcctgctttttgatggttttgaagggttgcatgatcatgagaattttcctcgttgctca
gccagtcagcctgaaaaagacttgtgcagtataaaggagctgctttcaggactcatccaa
aagaagatactcaatggttgtactttattacttacagcaagaccaaaagacaaggtgtac
cagtatgtgtccaaagtggataagactattgaaatagtaggattttcccctcagcagaga
gaattatacataaccaaatactttgaaggattaccctactgtgataatgcactgaaatta
atcaaagagtgtgagtacttgttcagtcattgttacagccctcttatgtgtagatttgtt
tgttttctctgtgagacagtacttgaaatgggagacaaaagccttccttcaactcttact
acagtcttcctgaaatttgttcagcaaaagataatatctatgaaaacagatgttacagcc
atgcaaaatcaagagagtcttgctacgttagcccgtatagcctggtatcttggagaaaag
caccaaaatgccgtgaaaagtaaccttcttccttctaaggaagttaaagagtttgctctg
aaacatggatttttcctgccatttgcattccccagacattcagatagtgaagaagaggaa
tttgggagcacgttctctgattttgtcattcagaatttcttgggtgcgcttcaccttatg
ttagcagaagagatcaaggataaaagtctaataaagtacctgtcttttccatccaagaag
aaaaaaccttataactggttagatttagtgcctcgatttttggctggattgttgttcctg
caggacgacccctacttctgctccctttcaaatgaggatgtaaaacaatcaaccaagaag
cagaaaacactcttgaaatatattagaaggctgcagataaatgagctctgtccggagagg
ttactcgatcttttacattgtatttatgaaacacaaagcaactatcttttgcagcatgtg
gccttaaggctcaagacagacctgtcttttctgggcgtagttcttacaccacctgatgtc
catgtactgcactatattttaaaaaggtcaagaaaagagttttccttggatttgtggaac
agcagcattgacatgcaagggctaaaagacttggttggcctaaagaatgtggcatcgttc
agggcctccctcagtgatacagtcaggctctggaaatctttagaacaaacaaaagactac
gagctgctgagagcatcaacagagaaatttgttcttgatccctttaaggcaaagacaatg
aaggacatcagtgacctttcagaccttgtagagatgcaggagaagatgatcaattgtgtg
caagatgcatctggttgcagcagctatgaaattcctgccatcaaaaacctcagaaaacta
gaatttgcgctgggtccggtatgcggccttcagggattcctaaaacttgtggaaattctt
gcagcctttccatcacttcagcatttagaccttgatgctctgagtgaaaatggcatagga
gatgaaggagcaaagagtctgtctgaagtctttccaaccctgacatcactggaaatactg
aagtaa
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