Chroicocephalus ridibundus (black-headed gull): 134520223
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Entry
134520223 CDS
T10910
Symbol
TRMT13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crid03016
]
134520223 (TRMT13)
Enzymes [BR:
crid01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
134520223 (TRMT13)
Transfer RNA biogenesis [BR:
crid03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
134520223 (TRMT13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
OrgC
Methyltransf_32
Motif
Other DBs
NCBI-GeneID:
134520223
NCBI-ProteinID:
XP_063201394
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All DBs
Position
8:21761220..21767469
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AA seq
491 aa
AA seq
DB search
MEPQAATAGAAGTEMAAPEPQLEPDRGSPVPGRCAYFVERKKRFCKMTPGPGRRFCGEHG
QHEGENDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPKPVYFVQDINAGLKDGAEIPE
RQVPVSSLSKEGLENLITKLKKASNGAGLELRLKEQILSHQALQEALSDPKNGESAFKHL
KQQASILGNMEKLHLLGPGRCFVEFGAGRGKLSHWVDVALQNVENVQFLLVERATTRFKV
DGKHKRRDSIFERLQVDIQHLCLKKVPILEKKKLPVVGIGKHLCGAATDLALRCLVESYT
ACCDGESEEPATKRFRTDKTEVASSNSADNECNKDDCKPVAGIVIALCCHHKCDWTHYVG
REFFKSVGLGPLEFHYFQRMSSWATCGMRETTTRASTSQESEDETNDTEEHEQTFSKTEG
GSDILQGILTVEERKEIGCLCKRLIDHGRIEYLQQRGYKAALQYYTESAVSLENVLLTAV
PSPSLIPEPTM
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcaggcggcgaccgcaggggctgctgggacggaaatggcggcgccggagccg
cagctggaaccggaccgtggctccccggtaccggggcgatgtgcctacttcgtagagagg
aagaagcgcttctgcaagatgaccccgggtcctgggcggcgcttttgcggagagcacggg
cagcacgagggagaaaatgacagaaaaagaattccatgccctcttgatccaaaacacact
gtatacgaagaccaactacaaaagcatttaaaaaaatgtaattcaagagagaagccaaag
ccagtctactttgttcaagatattaatgcaggtttaaaagatggggcagaaataccagaa
agacaagtacctgtctcttctctatccaaagaagggctggagaatttaattaccaagttg
aaaaaagcaagtaatggtgcaggcctagagcttcgccttaaggaacaaatactgtcccac
caggctttacaagaagccttaagtgacccaaagaacggggaatctgctttcaagcacttg
aaacaacaggcttcaattttaggtaacatggaaaaattacatttacttggtccaggaaga
tgttttgttgaatttggagctgggcgaggaaagctgtctcattgggttgatgttgcctta
cagaacgttgaaaacgttcagtttttgcttgtggaaagggcaactacaagattcaaggtg
gatggaaaacataaaagaagagattctatatttgaaaggcttcaagttgatattcaacac
ttatgtttaaagaaagtacctattttggagaagaaaaaactaccagtggtaggaattggg
aagcatttgtgtggagctgcaacagatcttgctttgagatgcttggttgaaagttataca
gcttgctgtgacggagaaagtgaagagcctgcaacaaaacgctttaggactgataagaca
gaggtggcttctagcaattctgctgataatgaatgcaataaagatgactgtaagcctgta
gctggaattgttattgcactgtgttgccatcacaagtgtgactggacacattatgtaggc
agagaattctttaaatcagtaggacttggaccattagaatttcattattttcagagaatg
agtagttgggccacttgtggcatgcgagaaaccacaaccagagcctctacaagtcaagaa
agtgaagatgaaactaacgacacagaagaacatgagcaaacattcagcaagacagaaggt
ggttctgatattttgcaagggatacttactgttgaagaacgaaaggagataggttgcctc
tgtaaacggctgattgatcatggacggattgaatatttacaacaacgaggctacaaggca
gcactacagtattatacagagtctgctgtgtccttggagaatgtcctgttgacagctgtc
ccaagtccatctttgataccagagccaactatgtga
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