Chroicocephalus ridibundus (black-headed gull): 134520229
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Entry
134520229 CDS
T10910
Symbol
SHMT1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid00260
Glycine, serine and threonine metabolism
crid00630
Glyoxylate and dicarboxylate metabolism
crid00670
One carbon pool by folate
crid01100
Metabolic pathways
crid01200
Carbon metabolism
crid01230
Biosynthesis of amino acids
crid01240
Biosynthesis of cofactors
crid04981
Folate transport and metabolism
Module
crid_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
134520229 (SHMT1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
134520229 (SHMT1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
134520229 (SHMT1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
134520229 (SHMT1)
Enzymes [BR:
crid01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
134520229 (SHMT1)
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GFIT
Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
134520229
NCBI-ProteinID:
XP_063201416
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Position
8:52269422..52276154
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AA seq
521 aa
AA seq
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MEGRVRKVYARRAGSRAVAERDRDPVRRAGDIGPSRMANSMQGEGGLPSAELWASHNKMV
MEPLDSNDPEVHSIIKKEKQRQRLGLELIASENFASRAVLEALGSCMNNKYSEGYPGQRY
YGGTEFVDELERLCQKRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD
LPDGGHLTHGFMTDKKKISATSVFFESMPYKVNPKTGYIDYDKLEENARLFHPKLIIAGV
SCYSRNLDYARMRKIADANGAYLMADMAHISGLVAAGVVPSPFDHCDVVSTTTHKTLRGC
RAGMIFYRKGTRSVDPKTGKETLYNLESLINQAVFPGLQGGPHNHAIAGIAVALRQAMTP
EFKAYQQQVVANCKALSTALMELGYDIVTGGSDNHLILLDLRSRGTDGGRAERVLEICSI
ACNKNTCPGDVSALRPSGLRFGTPALTSRGFRQDDFRMVAQYIHRGIELTLRVQKDMSPK
ATLKEFKEKLEEDKYRGELKALKEEVEAFAATFPLPGLPVL
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggaggggcgtgtccgaaaggtctatgctaggcgcgcgggctcccgcgcggtggcggag
cgggaccgggatccggtacggcgggcgggtgacattggacccagcagaatggcaaactca
atgcagggtgaggggggtctccccagtgcggagctctgggcctcccataataagatggta
atggagccgctcgacagcaacgacccggaggtgcacagcatcatcaagaaggagaagcag
cggcagaggctggggctggagttaatcgcgtcagagaactttgcgagccgagcagtcctg
gaagccctgggatcctgcatgaacaacaaatactctgagggttacccaggacagaggtac
tatggtgggacggagtttgtagatgagctggaaaggctgtgccagaagcgagccctgcag
gcgtaccggctcgaccccgagaagtggggcgtcaatgtccagccctactcagggtcaccc
gcaaactttgcggtgtacacggccctggtggagccccacggcaggatcatggggctggac
ctgcctgacgggggccacctcacccacggattcatgacagacaagaagaaaatctctgcc
acctctgtattcttcgagtccatgccctacaaggtcaaccccaagaccggttacatcgac
tatgacaagctggaggagaatgcccgcctcttccaccccaagctgatcatagcaggtgtc
agctgctactcgcgcaacctggactatgcccgtatgcggaagattgctgacgccaatggt
gcctatctcatggccgacatggctcacatcagcgggctggtggctgctggtgtggtgcca
tcccccttcgaccactgtgatgtcgtctccaccaccacccacaagaccttgcggggctgc
agggctggcatgatcttctaccgcaaaggcacccgcagcgtggaccccaagacaggcaag
gaaacactctacaacctggagagcctcatcaaccaggcggtcttccccgggctgcaggga
ggcccgcacaaccatgccatcgcagggatcgccgtggcgctgcggcaggccatgacgccc
gagttcaaggcttaccagcagcaggtggtcgcaaactgcaaggcgctctcgacagcgctg
atggagctgggctacgacatcgtcacagggggctccgacaaccacctgattctcctggac
ttgcgcagcagaggcacggatggcggccgggctgagcgggtactggagatctgctccatc
gcctgtaacaagaacacgtgccctggtgatgtcagcgccctgcgccccagtggcctgcgg
ttcgggacgccggctctcacctcccgcggcttccggcaggacgatttccgcatggtggct
cagtacatccacagagggatcgagctgacactgcgcgtgcagaaagacatgagccccaaa
gccacactgaaggaattcaaggaaaaactggaggaggacaaataccggggggagctgaag
gcactgaaggaagaggtggaggccttcgcagccactttcccgctcccggggctgcctgtc
ctgtaa
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