KEGG   Chroicocephalus ridibundus (black-headed gull): 134520310
Entry
134520310         CDS       T10910                                 
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04382  Cornified envelope formation
crid04510  Focal adhesion
crid04512  ECM-receptor interaction
crid04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:crid00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134520310 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134520310 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134520310 (COL4A6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    134520310 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:crid04147]
    134520310 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:crid00536]
    134520310 (COL4A6)
Exosome [BR:crid04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   134520310 (COL4A6)
Glycosaminoglycan binding proteins [BR:crid00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   134520310 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 134520310
NCBI-ProteinID: XP_063201526
LinkDB
Position
9:complement(13521004..13658377)
AA seq 1703 aa
MGRGSDPAPPAAGRAGLLVLLLLCLGAELASGGGKKSYSGPCGGRDCSAGCKCFPEKGAR
GRPGLVGLQGPIGAPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIP
GHPGQSGPRGLPGLDGCNGTTGSPGVSGSDGFPGLPGLPGRPGPKGHKGEPVFAQGGLKG
MKGENGLPGLDGISGPKGFPGPIGSAGPIGLPGLQGPMGPPGQPGPKGNMGLGFQGEKGE
KGDVGLPGPPGPPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDKGLPGMPGFGGVGEKGE
KGVPGLPGARGLLGLDGSDGIPGRKGHPGVPGYPGLDGGEGMKGELGDIGPPGPPIVIDR
EGVVISGAPGDPGNPGIPGPPGDEGISGLPGLPGAPGFPGLERDGKGPGGSPGVPGVKGE
VGEPGRATIGLPGTPGRVGLPGLPGAPGLPGLPRPSFPPDTILDGRTGAPGEPGQRGLPG
ALGPKGYKGEAGDCACDGGVTRAGLKGISGPPGPSGSPGVPGIKGIGGDPGTVGAPGLRG
PPALAGQQGLPGVKGEKGDSSYATGKGARGDRGATAPRGPSGIPGTPGRDGLPGLLGPPG
PPGDGGLGFPGEKGLPGLPGSKGHRGETGSPGVGYPGPSGVRGPPGDPGMDGFRGQAGLP
GPPGVTLPCIVPGAYGPPGTHGFPGLPGPKGSKGFPGIPGQPGLHGSKGQPGSPGVIGLQ
GEPGFPGPRGEQGSQGLPGLDGTDGLPGKMGASGLAGTKGAPGDVFGAESGALGEHGRPG
LPGDKGLTGDLGFPGPKGLDGRPGLLGIKGEQGNPGYSGVPGLRGPPGPGGPFGIKGKPG
PLGSPGLAGAPGLPGVKGLTGDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPFGQDG
RPGFSGPKGEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGTAGGKGSPGAVGLQGQKGDRG
DVGPPGLPVLGPPEQALQFKGDKGDPGLAGLGGFPGPRGDKGVPGSRGQPGTPGPIGSAS
KERGLHGDPGFPGPPGQPGLPGQKGAHGIIGFPGMPGERGSDGIPGTLGFPGPIGIPGPK
GDQGETVGIPGIPGAKGERGDPGFPGERGREGLKGEPGYPGNTGVNGLKGSPGDLGQEGP
AGIPGNAGLRGIPGPPGPPGQPGSVGFPGARGTAGPKGFHGFPGLNGLNGLPGTKGSPGT
PGLSEAGLKGPAGLPGPKGEEGSPGLGRGPLGFPGPKGSSGDMGPPGPVGLPGLPGKPGV
SLPSDIRGRPGDAGHPGTDGSSGLPGPQGPRGPPGPASDQGDTGNPGFPGVLGLRGTKGD
VGPTGPIGLPGASGFKGIRGEPGLMGMPGKDGPPGDPGYPGLKGEMGRRGLPGRQGAPGI
TPQPEEVTAPAGLPGLPGIDGVPGFDGDPGFQGPAGKPGTKGLPGRPGLKGRDGLPGSPG
VVGDPGPSGAPGPQGFEGVAGKPGSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPVGMNK
LWDGYSLLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTT
APIPMMPVDSVQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPIGWRSLWIGYSFLMHTA
AGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQSQQFVSAPP
SETLKAGQLRTRVSRCQVCMKNL
NT seq 5112 nt   +upstreamnt  +downstreamnt
atgggccgcggcagcgaccctgccccgccggccgccgggcgcgcagggctgctggtgctg
ctgctcctctgcttgggcgcagagctggcgagtgggggtggaaagaagtcttacagtggg
ccatgtggggggcgcgattgcagcgctggatgcaaatgttttccagagaagggtgcacgg
ggtcgaccaggactggttgggcttcaaggaccgataggtgcacctggatttactggccca
gaaggtttgccgggagcaaaaggtgagagaggagcagtgggcccccctggaccagccggg
cagaaaggcgacaagggcccaatgggagttccaggattccaaggcatcaacgggatccca
ggtcaccctggacaatctggacctagaggtctgcctggcctcgatggctgcaatggtacc
actggaagtcctggcgtttctggatcagatgggtttcctggcctacctgggctgcctggt
cgtcctggcccaaaaggccataaaggagaacctgtttttgctcaaggcggtcttaaagga
atgaagggagaaaatggtcttcctggattggatggaatttctggcccaaaagggtttcca
ggtccaataggttctgcaggccctataggattaccaggtttgcagggtccaatgggtccc
cctgggcaaccaggtccaaaaggtaacatgggattaggctttcaaggagagaaaggagaa
aagggtgatgtagggctgcctggccctccaggtcccccaccatccactggaatactggaa
ttcatgggatttccaaaagggaagcaaggagaaaagggtgagccaggccctcaaggattc
cctggagacaaaggattgcctggcatgccgggttttggaggtgttggagaaaaaggagaa
aaaggtgtgcctggcttaccgggtgccaggggtcttttgggactggatggatctgatggg
attccagggagaaagggtcatccaggtgttccgggctacccaggactggatggaggcgaa
ggcatgaagggtgaattaggtgacatcggtcccccaggccctcctatcgttattgacagg
gaaggtgtagtgatttcaggtgcaccgggcgaccctggaaacccgggaatacctggtcct
ccaggagacgaagggatcagtggtttaccaggccttccaggagctccagggtttccaggc
ctggagagagatggaaagggccctggagggtctccaggtgttccaggtgtgaagggtgaa
gtgggagaaccaggaagagcaacgattggattaccaggcactcccggcagagttggttta
ccaggtctgccaggagcaccaggattgcctggtttaccacgcccttcattcccaccagac
actatcctggatggaaggactggggccccaggagagcctggacaaagagggttgccagga
gctttgggtccaaaggggtacaaaggagaggcaggtgattgtgcttgtgatggaggagtt
acaagagctggtctaaaaggcatctcaggtccaccaggtccatcaggaagccctggtgtg
cctgggattaagggcattggtggagacccaggcactgtgggtgcaccaggactgcgaggc
cctccggctttggctggtcagcaaggtcttccaggcgttaagggagaaaaaggggattcg
tcctatgcaacaggcaaaggtgctcgtggggaccgtggtgcgacagcacccagaggacct
tcaggcatcccgggaacccctggcagggatggactgccaggcttgctaggcccaccaggc
cctccaggtgatggtgggctaggtttcccaggtgaaaaaggactgccaggattacctggc
tccaagggccatcgtggagaaactggttctcctggcgttggatatccaggtcccagtgga
gttcgtgggccgccaggtgacccaggaatggatggatttcgaggacaagcaggtcttcca
ggccctccaggtgtcaccttgccctgcatagttcctggagcatacgggcccccagggact
cacggctttccaggattgccaggtcccaaaggcagcaaaggttttcctggcattccaggc
caacctggattacatggctcaaagggacagccagggtctccaggagtaataggcttgcaa
ggggaacctgggttccctgggcctcgaggagagcaagggtcacaaggacttccaggactg
gatggaacggatggtttgcctgggaaaatgggtgcttcaggcttagctggaacgaaagga
gctcctggagatgtatttggtgctgaaagtggagccctaggagagcatggccgacctgga
ctcccaggtgataaagggcttacgggtgatcttggatttccagggccgaaaggattagat
ggaagaccaggcctcctaggtattaaaggcgaacagggtaatccaggatattcgggtgtc
cctggattgcggggacctcctggtcctggaggcccttttggcattaagggaaaaccggga
cccttggggtcacctggccttgcaggagcaccaggacttcctggagtcaaaggcctgact
ggggatgtaggtccacaaggccctgctggtatgaaaggcttcccaggtcttgatggtgct
ccaggatctcctggtgaaagaggattcttagggccacctgggccttttggtcaagatgga
cgtccaggtttctctgggccaaaaggcgagaaagggtcttctggcctgcttggtttccct
ggcatgccaggcctgcctggtgttccaggggtgaatgggtttaaaggaactcctggtaca
gctggaggaaaggggagccctggcgctgtgggactccaaggtcaaaaaggtgacagaggt
gatgtaggtccacctgggcttcctgttcttgggcctccagaacaggcactgcagttcaaa
ggagacaaaggagatcctggattagctggacttggaggattccctggacctagaggtgat
aaaggagtcccaggaagccgtggacagcctggtacccctggtccaattgggtcagcaagc
aaagagaggggtctccatggtgacccaggcttccctggtccacccggacagcctgggctg
ccaggacagaagggtgcacatggtatcataggatttccaggaatgccaggagagaggggt
tcagatggtatcccaggaacacttgggttcccaggacctattggcatccctggtccaaag
ggtgaccaaggagagactgttggcattcctggcattcctggagcaaaaggagagcgaggg
gacccggggttcccaggagagagagggagagaaggactcaagggtgaaccaggctaccca
ggaaacactggggtcaatggactcaaaggcagcccaggagatcttggccaagaaggacca
gcaggaattcctggaaatgctgggctgagaggaatccctgggccaccaggacctccaggg
cagccaggatctgttggattccctggagctcgtggaacagcgggacctaaagggtttcat
ggatttccaggtttaaatggtctgaatggcttgccaggcacaaaagggtctcctggaacg
ccaggtctgagtgaagctggactgaaaggccctgcaggtctcccaggtccaaagggtgaa
gaaggttctccaggcttgggtagaggacctctaggattccctggaccaaaaggctcatca
ggagacatgggtccccctggtcctgtgggactacctggcttgccaggaaaacctggagtt
tctcttccttctgatatacgtgggagacctggggatgctggccatccaggaactgatggg
agttcaggtcttccaggtcctcagggaccacgaggtccccctggcccagcttctgaccaa
ggtgacacaggcaatccaggtttccctggtgttcttggcttgcgaggcactaagggtgac
gtgggacccactggtccaattggactccctggggcatccggattcaaaggtataagaggt
gagcctggccttatggggatgccaggtaaagatgggcctccaggggatcctggttaccct
gggctgaaaggtgaaatgggccgtcgaggtctccctggccgacaaggggctccaggtata
actccacagccagaagaagtcacagcccctgcaggcttacctggtctgccaggaattgat
ggggtccctggctttgatggagatcctggatttcagggcccagctggaaaaccaggtaca
aaaggtctgccaggaagacctggtttgaaaggacgtgatggtttacctggatcacctggc
gtagttggggatccaggaccttcaggtgccccaggaccacagggatttgaaggtgttgct
ggaaagccgggctcacttggtttgccgggaatgcctggtcggagcgtgggcgttggatac
actttagtgaagcacagtcagtcagaccaaatcccaccttgtcccgtagggatgaacaag
ctctgggacggctacagcttactttatgtggaggggcaggaaaagtcacacaaccaggat
cttggttttgctggctcgtgtttgcctcgcttcagcaccatgccttttatttactgcaac
atcaatgaagtgtgctactacgccagccgaaatgacaagtcctactggctctccaccact
gctcctatccccatgatgccagtggacagtgttcagatcccacagtacatcagtcgttgc
tcagtgtgtgaagcaccttcccaggctgtggctgtgcacagccaggacatcacgatccca
cagtgtcccattggctggcgcagcctatggataggatactctttccttatgcatactgcg
gctggtgcggaaggtggaggtcagtcccttgtctcgcccggttcttgcctggaggatttc
cgtgctactccattcattgaatgcaacggtgctaggggaacgtgccattactttgcaaac
aagtacagcttctggctgacaaccgttgaacagtcgcagcagtttgtcagcgctcctccc
tcagaaactctgaaagcaggacagcttcgaacaagggtcagccgttgccaagtgtgcatg
aagaacttgtag

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