KEGG   Chroicocephalus ridibundus (black-headed gull): 134520883
Entry
134520883         CDS       T10910                                 
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
crid  Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04382  Cornified envelope formation
crid04510  Focal adhesion
crid04512  ECM-receptor interaction
crid04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:crid00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134520883 (COL4A5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134520883 (COL4A5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134520883 (COL4A5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    134520883 (COL4A5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:crid04147]
    134520883 (COL4A5)
   00536 Glycosaminoglycan binding proteins [BR:crid00536]
    134520883 (COL4A5)
Exosome [BR:crid04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   134520883 (COL4A5)
Glycosaminoglycan binding proteins [BR:crid00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   134520883 (COL4A5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 134520883
NCBI-ProteinID: XP_063202827
LinkDB
Position
9:13658720..13741694
AA seq 1687 aa
MEPRLWSCSLAAGCLLLLGCWGPEEAVAAACHGCTSSSKCDCSGVKGEKGERGFPGLEGQ
PGLPGFPGPEGPPGPRGSKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGP
QGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEPGEIITSLLPGQKGDPGFPGL
PGIPGPPGSMGVPGPIGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP
GPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGVKGEKGEQGEPGKRG
KPGKDGEPGQPGRDGLPGGPGINGAPGREGEKGEKGDTGPPGPPGIVISRPGIDATVGPK
GSKGLPGLPGAKGERGFSGRPGPPGLPGSPGITTVGPPGPPGLPGERGQKGDPGLPGVSI
PGQPGLDGPRGPPGPPGPPGPTAPSVPPGEGLCERGPPGPPGIPGQQGFTGERGQKGDQG
DTCFNCIGTGITGPPGERGPPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGSPGPP
GRPGPKGDPGDVLTSPRMKGDKGDPGFPGPPGLPGLDGTPGRDGLPGLPGPKGEPGSVAF
KGEIGIPGDPGIPGPPGDKGLPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGPKGDPGQT
ITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLPGIPGAKGEPGIPGIGLPGPPGPKGFP
GTPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGTKGVQGPKGDPG
FPGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGSPGPPGPVGPPGL
QGIPGEKGDPGPPGFDVPGPPGDRGTPGYPGPPGLPGPQGSPGPPGRDGMPGFPGAKGEM
GVMGAPGPPGPPGTPGRSGLPGLKGNSGLPGPPGPPGPVGQKGIKGEAGLPGPPGKVDPK
QLGAKGEKGEPGVPGIPGLSGQKGYQGLPGDPGPPGLSGPPGVPGLPGIKGDTGLPGQPG
PTGPPGVKGAMGEMGLPGPPGIKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLSSIGIPGL
PGPKGDLGLPGYPGSPGSKGVAGNPGLPGFPGSPGAKGEPGLPGFPGTPGIPGPKGIEGP
PGNPGLPGPPGPVGDIGRPGPPGPSGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGPPGLP
GLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLEGPKGSPGPPG
VPGRPGPPGPEGPRGPPGSGGLKGEKGNPGQPGPPGLPGQKGDHGPPGRQGDPGRPGLNG
MKGDPGVPGVPGFPGMKGPTGPAGPTGLTGSQGPPGPPGPPGLPGTIGRSIVVKGDPGPP
GPPGQPGSKGPPGLPGPQGLPGPIGHPGDPGRDGLPGFDGPAGRKGERGLPGQPGSRGIQ
GPPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTSRIYDGFSLLYVQGNERA
HGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLTGQSIQ
PFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGAEGSGQALASPG
SCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVSEMFSKPQSETLKAGDLRTRISRC
QVCMKKT
NT seq 5064 nt   +upstreamnt  +downstreamnt
atggagccgcggttgtggagctgcagcctggctgccggctgcctgttgctgctggggtgc
tgggggccggaggaggcggtggcggcggcttgccatggatgtacatcttcatccaaatgt
gactgcagtggagtaaaaggtgaaaagggtgaaaggggattcccaggcttggaaggacag
ccaggtttgcctggatttccaggacctgaaggaccacctggtccaagaggctcaaagggt
gatgatggacttccaggacctattggacccaaaggaatcagaggacctccagggcttcca
ggatttccaggaacaccaggacttcctggattaccaggacaagatgggccaccaggacct
cagggtatcccaggatgcaatggaacaaagggagagcgtggattcccaggcagtccaggt
tttcctggtttacaagggcctcctggaccccctggtctgccaggtatgaagggtgaacca
ggtgaaataattacatccttgctgccaggacagaagggcgacccaggatttccaggtctt
ccaggcatacctggcccacccggctccatgggagtaccaggtccaattggccctccaggg
ccaccaggtttgacaggacctcctggtccaccagggctgccaggacctaagggtaatatg
ggtttgaatttccaaggacccaaaggtgaaaaaggtgaacaaggtcttcagggacctcca
gggccaccaggacaaattggagaacagaagagaccaaatgacattgagtttcagaaagga
gatcagggtattccaggtgatccaggcccaccaggacttcctgggccacaaggccctcct
ggtcttcccggtggcgtaaaaggtgaaaaaggtgagcaaggagaaccaggcaaaagagga
aaacctggcaaagatggagaacctggtcagcctggtagggatggtttacccggtgggcct
ggaatcaatggtgctccaggaagagagggcgaaaagggtgaaaaaggtgacactggtccc
cctggtcctcctggaattgtcatttcaagaccaggcattgatgcaacagtgggaccaaaa
ggtagcaaaggattgccaggacttccaggagccaagggggagcgtggattctctggtagg
ccaggcccacctggcttaccaggttctccagggatcactactgttggacctcctggccca
cctggcttacctggtgaaagaggacagaagggagatccaggtttacctggtgtttctatt
cctgggcaaccaggacttgatggaccacgaggacctcctggaccaccaggtcccccaggg
ccaactgcaccatctgttcctcctggtgaagggttatgtgagcgtgggccaccaggtcct
ccaggaattccaggacaacaaggctttacaggggagcgaggccaaaaaggtgatcaagga
gacacatgcttcaattgcataggaactggaataactgggcctcctggggagagaggacca
ccaggacctccaggtagtccaggttctcctggttttcctggaccaaaaggtgaaaagggg
cttcctggattaactggccttgtagggccaccaggattcccagggtccccaggtcctcct
gggagacctggtcctaaaggagacccaggggatgtcctgacttctccaagaatgaaaggt
gacaaaggagaccctggcttcccaggacctccaggtcttcctggcctagatggcactcct
ggacgagatggactgccaggtctacctggtcctaagggggaacctggcagtgttgcattc
aaaggagaaataggtattccaggtgatccaggaataccaggtcctcctggagacaaagga
cttcctggacctcctgggtttggtccacaaggttcccctggtgaaaagggcatccaaggt
gtatcaggccgcccagggcctcctggagttcctggtccaaaaggtgaccctggccagact
attacagaaccaggagttcctggcccccctggtcctccgggaagaaatggtgacccaggt
cttccaggagatcctggtcagccgggtcagcgtggcttaccaggcatcccaggagcaaag
ggagagccaggtattcctggcattggacttccaggtccaccaggcccaaaaggtttccca
gggactccaggccctcccggagctccgggaactccaggtcgccctggtctagatgggcct
cctggaccacctggtttcccaggacagaagggagatcgtggatttggagttccaggaccg
cctggacccccaggaccaccaggcacaaaaggagttcaaggacccaaaggtgatcctggc
ttcccaggaaaccctggtctcccaggacgggcaggttttgatggaacgccagggcctaaa
ggtgaccctggaccaagcggaccaccaggactcccaggcccaccaggcatccctggcatt
ggtggtcaaggtccacctggatctccaggacctccgggtcctgttggccccccagggttg
cagggcattccaggggagaaaggggatccgggtcctccaggcttcgatgttcctggtcct
ccaggcgaccgaggaaccccaggatatccaggaccccctggtctcccagggcctcagggt
tcacccggaccacctggccgggatggaatgcctggatttccaggtgccaaaggtgagatg
ggcgtcatgggagctcccggtcctccagggcctccaggaactcctggaagaagcggcctg
cctggcttgaaaggtaacagtggattacctggtccgccagggcctcctggaccagtagga
cagaaaggtatcaaaggtgaagcaggcctgccaggtccacctggaaaagttgatccaaaa
cagctaggagcaaaaggagaaaaaggcgagccaggtgttccaggtattcctggtttatca
ggacagaaaggttatcaaggtctcccaggtgacccaggcccaccaggacttagtggccca
ccaggtgtgccaggattgccaggcatcaagggagacacagggcttcctggacagccagga
ccaacaggacctccaggggtgaaaggtgccatgggagagatgggccttccaggtccccca
gggattaaaggcagccaaggaatagcaggacgcccagggcagcctgggcctgcaggattt
cctggattgaaaggggagaaaggtgaccctggtctttcaagcattggtattcctggtctc
cctggaccaaagggtgatcttggtttgcctgggtacccaggtagtccaggcagtaaaggt
gtcgctggaaatcctggtttgcctggatttccaggcagtccgggtgcaaaaggagaacca
ggccttcctggattcccaggaacgccaggaattccaggaccaaaaggtatcgagggacct
ccaggtaatcctggcctgcctggaccacctgggccagtaggtgatattggccgtcctggc
cctcctggtccttcaggggagaaggggcagcctggtcgagatggtatccctggaccagct
ggtcagaagggtgaaccaggtctaccaggttttgggcgcccaggacccccaggactccca
ggattgtcagggcaaaaaggagaactggggttacctggcccaccggggccccctggactt
ccaggtctgaagggagaaccaggttttcagggattccctggtctacagggtccaccaggt
ccaccaggattaccagggccacctctagaaggtcctaaaggtagccctggcccaccaggt
gttccaggaaggccaggtccaccaggcccagaaggtccacgagggccaccaggcagtgga
ggacttaaaggggaaaaagggaacccaggtcaacctggcccacctggcctgcctggtcaa
aagggagatcatggaccacctggacgccagggggatcctggtcgtccaggcctgaatgga
atgaagggcgaccccggggttccaggagttccaggattcccaggtatgaagggtcccact
ggacctgcaggacccactggcctcacaggcagtcaaggaccgccaggcccaccaggtcca
ccaggtttaccaggtaccattggacgaagcattgttgtcaaaggtgaccctggtcccccg
ggtcctccaggacagcctgggtcgaaagggccacctggattgccagggccacagggattg
ccaggtccaattggtcatcctggtgacccagggcgagatggactacctggttttgatggt
ccagcaggacgtaaaggagaaagaggtcttccaggccagccaggttcacgaggaatacag
ggacctcctggtcctgatggcttacaaggcccacctggtcctcctggaacagcttctgtt
gctcacggattccttataactcggcacagccagaccagggatacaccactatgtccacaa
ggaacgtcaagaatatatgatggattctctcttctatatgtgcaaggaaatgagagagca
catggccaggatttgggtactgctgggagctgtcttagacgtttcagcaccatgcccttc
atgttctgcaacatcaacaatgtttgtaattttgcatcaaggaatgactattcctattgg
ctgtcaactccagagccaatgccgatgagcatggagccactgactgggcaaagcatccag
ccattcattagccgctgtgttgtgtgcgaagctcctgctatggtgatagctgtccacagt
cagaccattcagattccttcgtgtcctccaggctgggactccctttggattggttattct
ttcatgatgcacactagtgcaggagcagagggctctggacaggccttggcatcgcctgga
tcctgtttagaagaattccgctcagctccgtttattgaatgccatggtcgtggcacttgt
aattactatgccaattcatacagtttctggctggcaactgtagaggtgtcagaaatgttc
agtaaacctcagtcagagacactgaaagctggagacttgaggacgcgtattagtcgttgt
caagtttgcatgaagaagacgtaa

DBGET integrated database retrieval system