Chroicocephalus ridibundus (black-headed gull): 134521910
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Entry
134521910 CDS
T10910
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134521910 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crid03041
]
134521910 (DDX46)
Enzymes [BR:
crid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134521910 (DDX46)
Spliceosome [BR:
crid03041
]
Complex A
U2 snRNP components
U2 related factors
134521910 (DDX46)
Complex B
134521910 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
134521910
NCBI-ProteinID:
XP_063205089
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All DBs
Position
11:15147190..15172693
Genome browser
AA seq
1045 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRGKRGEDRRSRSRDRERRRERSRSRDKRRS
RSRDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPSKNRKTENRSRSK
EKTEGVEVSKEKKKDKDDKEEEKDKDATTNTVATENFDQNKLEEEMRKRKERVEKWREEQ
RKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGNEVEDEELDPLDAYMEE
VKEEVKKFNMRSVKGGGGSEKKSGPTVTKVVTVVTTKKAAAESEKKKGELMENDQDAMEY
SSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYR
LELEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIG
IAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL
RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRM
FDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVE
QHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGID
QYDRDSIINDFKNGICKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAG
NKGYAYTFITEDQARYAGDIIKALELSGNPIPTDLEKLWADFKDQQKAEGKLIKKSSGFS
GKGFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPG
TSNAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVLVPFHFKDVMQQATNAILRGGTI
QAPTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTAR
WKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEIT
RLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtccaggcattatcgaaagcgctctgcgtcacgtggacgctctggtagc
cgttccagaagtcgttctccatctgacaaaagaggaaaacgtggagaagacagacgctct
agaagtagagatcgagaacgtagacgtgagaggtcacgcagtagggacaagagaaggtct
cgatcgcgtgacagaaagcgtcaaagacgttcaagaagtagagaaagggaacggagccga
gaaagaagaagatcccggagccgagagaggaggcgctctagaagcagaagtagaggtaga
cggtctcgatcctccagtccaagcaagaacaggaaaacagaaaacagatcaagatctaaa
gaaaagacagaaggtgttgaagtttccaaagaaaagaaaaaagacaaagatgacaaagaa
gaagagaaggataaagatgctaccacaaatactgtggccactgagaattttgatcagaac
aaactagaagaagagatgagaaaacgaaaagaaagagtggagaaatggagggaagaacaa
cgcaagaaggctatggaaaacataggagaactgaaaaaagaaattgaagagatgaaacag
gggaaaaaatggagtttagaagatgatgatgatgatgaagaggaaactgcagaaggagaa
aaagaaggcaatgaggttgaagatgaagagttagatcctttggatgcttatatggaagaa
gtaaaagaagaggtcaagaagtttaatatgagaagtgtgaaaggtggaggtgggagtgaa
aagaaatccggaccaactgttaccaaagtagtaaccgtggtgacaaccaaaaaggcagct
gcagagtcagaaaagaagaaaggggagctcatggagaacgaccaagatgcaatggagtat
tcctcagaagaggaggaagttgatcttcagactgccctgactggctatcagaccaagcag
agaaagctgctagaaccagtggatcatggaaagatagaatatgaacctttcaggaaaaac
ttctatgttgaagtaccagaactagctaaaatgactcaagaagaggtgaatgtgtacagg
ctggagttggagggaattacagtcaagggaaaaggctgccctaaaccaataaaaacctgg
gtacagtgtggtatttccatgaagattctcactgccctcaaaaaacatggctatgaaaag
cccactcccattcaaacccaggccatcccagcaattatgaatggacgtgacttgattggc
attgctaaaacaggaagcggaaaaactattgcatttttgttgcccatgttcagacacatt
atggatcagagagcattagaagaaggagaaggtcccatagctgtcattatgacacctact
cgtgagttggctttgcagattaccaaggagtgcaagaaattctcaaagacacttggactt
cgagttgtgtgtgtctatggaggaacaggaatcagtgaacagatagctgaactcaaaaga
ggtgctgaaattattgtttgcacacctgggcgtatgattgacatgttagcagctaacaat
ggtcgggtgacaaatctccgtagagtcacgtatgttgtacttgacgaagcagacagaatg
tttgacatgggttttgagcctcaggttatgcgcattgtagacaacgtcaggcctgatcgt
cagactgtcatgttctctgctacttttcccagagctatggaggcactagctcggagaatc
ctaagtaaaccgatagaagtgcaggttggaggcagaagtgttgtctgttctgatgtggag
caacacgttattgtcatagaagaggagaacaagtttctgaagttactggagctactggga
cactatcaggagaaaggatcggttatcatatttgtagataaacaagaacacgctgatggg
ttgttgaaagatttaatgagagcctcttatccttgcttgtctcttcatggaggtattgat
cagtatgatagggacagcataattaatgatttcaagaatggaatttgcaaacttctggtg
gccacatctgtagcagcaaggggcttggatgtaaaacaattgatgctggtggtcaattat
agctgtcccaaccattatgaagattatgtgcaccgagcaggccgaactggacgagctggc
aataaagggtatgcgtacacattcattacggaggaccaggcacggtatgctggtgatatc
attaaggctttggaattgtctgggaatccaattcctactgatttggagaagctctgggct
gacttcaaagaccaacagaaggctgaggggaagttgattaagaaaagcagtggattctct
ggcaaaggttttaaatttgatgaaacagaacaggctttggctaacgaaagaaagaagcta
caaaaagcagctcttggcttgcaagattcagatgatgaagatacagctgttgatatcgat
gaacaaattgaaagcatgttcaactcaaagaaaagagtaaaagacatggcagcaccggga
acatcaaatgctcctacaccatcagctggaaacgcagaaaaattggaaattgcgaaaaga
ttggctttgagaatcaatgcccaaaagaatcttggagcagaagcacaagtattggtgccc
ttccactttaaggatgtgatgcagcaggctacaaatgctatcctgagaggaggcacaatt
caagcacctactgtatctgccaagaccattgcagagcagctggctgaaaaaatcaatgct
aagctcaattatgtacccatagagaagcaggaggaagagaaacaagatggaggacaaaat
gaatcctttaagagatatgaagaagaattggagatcaatgacttcccacagactgccaga
tggaaagttacctccaaagaagcactgcagagaatcagtgaatattctgaagctgctatt
acaatcagaggaacttacttccctccaggcaaagaacccaaggaaggagaacgaaagatt
tatttggctatagaaagtgccaatgaactggctgtacagaaagcaaaggcagaaatcaca
cgacttataaaagaggagctcatcagattgcaaaattcataccaaccaaccaacaaagga
agatacaaagttctatga
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