Chroicocephalus ridibundus (black-headed gull): 134521926
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Entry
134521926 CDS
T10910
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134521926 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crid03019
]
134521926 (CNOT6)
Enzymes [BR:
crid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
134521926 (CNOT6)
Messenger RNA biogenesis [BR:
crid03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134521926 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134521926 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
134521926
NCBI-ProteinID:
XP_063205127
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All DBs
Position
11:17405181..17437755
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AA seq
557 aa
AA seq
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MPKEKYDPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWTLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLAGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGMEKQLVLVANA
HMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVSGELGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPPVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaagtacgatccacctgatccacggaggatgtacacaattatgtcctca
gaggaagcagccaacggaaagaaatcacactgggcagagttggaaataagtgggaaagtg
agaagcttgagttcgtcattgtggacgctgacccatttgacagctttgcatctcagtgac
aattccttatcccgtattccttcagacattgccaagcttcacaatctggtatatctggac
ctgtcctctaataaaattcgcagtttaccagcagagctcggaaacatggtgtcactcagg
gaactacatttaaataacaacctgttacgagttttaccttttgagctgggaaaactgttc
cagttacagactttgggtctgaaaggaaatccacttacacaggatattctgaacctttat
caggaaccagatgggacacgaaggctactgaactatttgcttgataatttggcaggtact
gcaaaaagaatttcaacagaacaaccacctccaagatcttggattatgttgcaagaacca
gaccgtacaagaccaacagccttgttctctgtcatgtgttacaacgtactctgtgacaaa
tacgctacccggcagctgtatggctactgtccatcttgggcattgaactgggaatacaga
aaaaaagccattatgcaggaaatcctgagctgcaacgctgacatcataagtcttcaggag
gttgaaacggaacagtactacagttttttcctggtagaactgaaagaacgtggctacaat
ggattcttcagtccaaaatctagagctaggacaatgtcagaacaggaaagaaaacatgtt
gatggttgtgcaatatttttcaaaacagaaaaatttactttggttcaaaaacatactgtt
gagtttaatcaactagctatggcaaactcagaaggttcagaagcgatgctgaacagagtt
atgacaaaagacaacattggagttgctgtattgttagaactgcgaaaggaattgatagaa
atgtcatctggaaagccacatcttgggatggaaaagcagctagttcttgtagctaatgca
catatgcattgggacccagattattccgatgtgaagctggttcagactatgatgttcctg
tccgaggtaaagaacattattgataaagcttctcgtagtctcaaacctggtgtttcggga
gaacttggaaccattccacttgtactgtgtgcagatctcaattctctaccagactctggt
gttgttgagtacttgagcactggtggagtggaaacaaaccacaaagattttaaggaactg
agatacaatgaaagtcttactaacttcagctgtaatgggaaaaatggaacaacaaatgga
agaattacacatggtttcaagttgaagagtgcctatgagaatggtctaatgccttataca
aattatacatttgacttcaagggtattattgactacatcttctattctaaacctcagcta
aacatacttggcattcttggacctttggatcatcattggttaatagagaacaatataagt
ggttgtccacatccacttatcccttctgaccacttctcactttttgcacaactggagctt
ttgctgcctttcctgcctcctgtaaatggaatccatctccctggcaggaggtag
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