Chroicocephalus ridibundus (black-headed gull): 134521975
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Entry
134521975 CDS
T10910
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03440
Homologous recombination
crid03450
Non-homologous end-joining
crid04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134521975 (RAD50)
03450 Non-homologous end-joining
134521975 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
134521975 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crid03032
]
134521975 (RAD50)
03400 DNA repair and recombination proteins [BR:
crid03400
]
134521975 (RAD50)
DNA replication proteins [BR:
crid03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
134521975 (RAD50)
DNA repair and recombination proteins [BR:
crid03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
134521975 (RAD50)
BRCA1-C complex
134521975 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
134521975 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
NPV_P10
AAA_24
AAA_22
AAA_13
Motif
Other DBs
NCBI-GeneID:
134521975
NCBI-ProteinID:
XP_063205210
LinkDB
All DBs
Position
11:complement(13449508..13472771)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIITFLNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGSSFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRSMVCTQKGKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQSSKVKECQAELKYLKQNKEKAQEIQDHLSNREAQLAASKDN
VKSIENQLDPLKTSLAAVEQNLMKVMRLDNDVKALESRRRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYQNHQKTVKEKETRLLDCKRELDKATKECQRFNSEKSELLIERGRLQMQADRH
QEHIATRDSLIQSLAVQLELDGFERAPFNERHITNFHRLLKERQKRDIEAANHLMREFAR
KETMKQKQIDEIRDKKTGLERTIDLKSDIQNKKQVELKNVKYELQQLEGFSDRILELDQE
IVKTEHELEKAERNSNVETLELEVQTLQNEKINLDKALRKLDQEMEQLNLHTMTITQMEM
LKKDKAEKEEQIRRVKSRHSDELTALLGYFPNKNQLEDWLHNRNRKINQTRDNLAVLNKR
LASVECDKTHFSNELRKKEEQLSLHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLREENQSCCPVCQRDFESEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKRRDEMMSLKPLRRTVLDLHEKDIPDLRNKIQSANRDLTGLKVEIEEQESLLQTALS
EEEGAKACLQDITLMERHQTDIRDVERKIAQQEAKLLGVDLSRTVLQVSHEKQEKKHLWD
TVTGKIELNQKLKQDQQNQIQQLKSTVNELKAEKLQIASSMQRRQQLEEQTVELTTEVQS
LCREIKEAKEQVFPLDATLEKLQEEKEDLMNKRTASNKETQEKINGIEEKVKDINKYMKE
IENYIQQGKEDYKKQKESELDEVNSQLATCEKQKEKISKEMEMIRQDIDTQKIQQRWLED
NLTLRKRNEELKEVEDNIKHLVKEMGEMKVPQLKNEQKHLEEKIDSLKRNHHVALGRQRG
FEEEIVRFKKELREPQFKDAEEKYREMMIIMRTTELANKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagattgagaaaatgagtatcctcggagtgaggagttttggggtagaggataaa
gataaacaaattatcacttttcttaatccattaactattttggtgggaccaaatggtgca
ggaaaaacgactatcattgaatgtcttaaatatatatccactggagattttcctcctggc
accaaaggaagctcatttgttcatgatccgaaggttgccaatgaaacagatgttagagct
cagattcgattacagtttcgagatgtaaatggagagctcgtagctgttcagcggtccatg
gtctgtacccagaaaggcaagaaaacagaatttaaaacacttgaaggtgtcattactaga
acaaagcatggcgagaaggttagcctgagttccaagtgtgcagaaattgatcgagagatg
atcagtgcccttggtgtttccaaatcagtgattaacaatgtcattttctgccaccaagaa
gaatcaaactggccattaagtgaagggaaagccctgaagcaaaaatttgatgagatcttt
tcagcaacaaggtatattaaagcactcgaaactctccgtcaggtacgactgaaacaaagc
tcgaaagtaaaagagtgtcaggcagaactgaaatatctaaaacagaataaagaaaaagca
caggaaatccaagatcatcttagcaatagagaggctcaactggctgcttctaaggacaat
gtaaaatcaattgagaatcaacttgatcctctaaagacttctctggcagcggttgaacag
aatctcatgaaagtaatgaggctcgacaatgatgtaaaagccctggagagccggaggagg
cagatggagaaagataatcaagatttgcaacagaagatggaaaaggtttttcaaggaaca
gatgaacaactaagggatagataccagaaccaccagaaaacagtgaaggagaaggagacg
agattgttggactgtaagcgtgaattagataaagccactaaagaatgccagagatttaac
agtgagaaatcagaactacttattgaacgaggtcgtcttcaaatgcaagcagatcgtcac
caagaacacatcgcaacgagggattcattaattcagtctttggcagtacagctggaatta
gatggttttgagcgagcaccttttaatgaaaggcacattaccaattttcacaggttgttg
aaggaaagacagaaaagagatatagaagccgcaaatcatttaatgagagaatttgcacga
aaagaaacaatgaaacaaaaacagatagatgaaataagagacaagaaaactggattagaa
agaaccattgacctgaaatcagacattcaaaataagaaacaagttgagctgaagaatgta
aaatacgaattgcagcagttggaggggttttcagacagaattctggagttggatcaggag
attgtcaagacagaacatgagctggagaaggctgagaggaacagcaatgtagaaacactc
gaactggaagtacaaactctgcaaaatgagaaaataaacctggacaaagctcttcggaag
ctggatcaagagatggaacagttgaatctacataccatgacaattacccaaatggagatg
ctgaaaaaagacaaagcagagaaagaagagcagatcagaagagtaaaatcaagacattct
gatgagctgacagcactgttgggatactttccaaataaaaaccaacttgaagattggctt
cataatagaaatagaaagattaatcagacaagggataatcttgctgtccttaacaaacga
ctggcatctgtagaatgtgataaaactcatttcagtaatgagctaagaaaaaaagaagaa
caattgtcacttcatgaagcaaagctctttgatgtttgtggaagccaagattttgacagt
gatctgaacaagcttcaagatgaaattgaaaaaagttcaaaacagcgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacaactgagagaggagaaccagtcgtgt
tgtccagtttgccaaagagattttgaatcagaggccgagctgcaagatgtaattagtgac
ctgcagtctaaactgcgtcttgctccagacaaactgaagtctacagagtctgagcttaaa
agaaaagagaaaagacgtgatgaaatgatgagccttaaaccccttaggcgaactgtactt
gacctccatgaaaaggacataccagacttgaggaacaagatacagagtgcaaacagggat
ttaacaggcctgaaggttgagatagaagaacaggaatcactcttgcagacagctttgtct
gaagaggaaggtgccaaggcatgtttacaggatataacactaatggaaaggcaccagact
gatattagggatgttgaacgaaaaattgctcagcaggaggctaagctgctaggggttgac
ttaagtagaactgttctacaagtaagccatgaaaaacaagagaaaaaacacttgtgggat
acagttactggtaaaattgagttaaatcaaaaactcaagcaagaccagcaaaatcagatt
cagcagctaaagagtacagttaatgagcttaaagcggagaaacttcagattgccagcagc
atgcagcgtcgacaacagctggaggaacaaacagtggaattaaccactgaggttcagtcc
ttatgcagggagatcaaggaagcaaaagaacaggtgtttcctttggatgcaactttagaa
aaactgcaggaggagaaggaggatctaatgaataaaaggactgcaagtaataaggaaaca
caagagaagataaatggcatagaagagaaagttaaggatataaacaagtacatgaaagaa
attgaaaactatattcaacaaggaaaagaagactataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcagctagctacctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgattcgacaagatattgacactcaaaagatacagcagaggtggctagaggat
aatcttactttgaggaagcggaatgaagagctaaaagaggttgaagacaatataaaacac
ctggtgaaggagatgggagaaatgaaagtcccacaattgaaaaatgaacagaagcattta
gaggagaagatagactctctgaaaagaaaccatcatgttgcacttggccgacaacgtgga
tttgaggaagagattgttcggtttaaaaaggaacttcgagagccacaattcaaagatgca
gaggaaaaatatagggagatgatgattattatgagaacaacagaactagcaaacaaagat
ctggatctttattacaaggctcttgataaagcaataatgacatttcatagcatgaagatg
gaagaaatcaacaaaataattcgtgacctttggcgaagcacctacagaggacaagatatt
gaatatatagaaatccgttctgatgcagatgagaatgtctcagcctctgataaaagaaga
agttacaattatagagtggtaatgataaagggagatacagcactggatatgcgaggaagg
tgtagtgctggacaaaaggtgcttgcttctctcattattcgtcttgctctagcagaaacg
ttctgtctcaactgtggtatattggcactagatgagcctactaccaatcttgatcgagaa
aacatagagtcccttgcacatgccctggtggagataataaaaagccgctcacaacagcgt
aactttcagcttctggtgataactcatgatgaagattttgttgaacttctgggccgttct
gaatatgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcatg
aaatgcagtgtcagctccctgggctcatatgttcattag
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integrated database retrieval system
