Chroicocephalus ridibundus (black-headed gull): 134522347
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Entry
134522347 CDS
T10910
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134522347 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crid03041
]
134522347 (PRPF6)
Spliceosome [BR:
crid03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134522347 (PRPF6)
Complex C
U5 SnRNP specific factors
134522347 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
TPR_1
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
134522347
NCBI-ProteinID:
XP_063206020
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All DBs
Position
12:complement(4415810..4441400)
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacaggtttcaccacccgctcggatattggccctgcgcgtgatgcc
aatgaccccgtggatgatcgtcatgctccgccagggaagagaactgttggggatcaaatg
aaaaagaatcagacggctgatgatgatgacgaagatttgaacgacaccaattatgatgag
ttcaatgggtatgctgggagcctcttctcaagtggtccctatgaaaaagacgatgaggaa
gcagatgctatttatgcagctttggataagaggatggatgaacgcagaaaagaaagaagg
gaacaacgagaaaaagaggaaatagaaaaataccgtatggagcgacccaaaattcagcag
cagttctcggatttgaaacggaagctagcagaggtcacagaagaagagtggctgagtatt
ccagaagttggtgatgccaggaacaagcgtcagaggaatcctcgttacgagaagctgact
cctgtacccgacagcttctttgcaaagcatttacagtcaggggagaatcacacttctgtg
gacccacgccaaacgcaatttggtgggttgaatactccgtatccagggggcttgaatact
ccatacccaggaggaatgacaccaggcttaatgacacctgggacaggcgaattggatatg
aggaagatcggccaagccaggaacaccttgatggatatgaggctaagccaggtgtcggac
tctgtgagtggccagactgtagtggacccgaaaggatatctgacagacttgaattcgatg
attcccacgcatggaggagatatcaatgatatcaagaaagcccgtttgctcctgaaatct
gtacgagagaccaatcctcatcatccgccagcctggatagcatcagcccgactggaggag
gtcactggcaaactccaagtggctcgaaacctcatcatgaaaggaacggagatgtgcccc
aagagtgaagatgtttggttagaagctgctcggcttcagcctggggatacagccaaagct
gtggtggcccaagctgtccgccaccttccgcagtctgtccgaatttatataagagcagca
gagctggagacagacatccgtgcaaagaaacgcgtccttaggaaagcccttgagcatgtt
cccaattcagtgcgtttgtggaaagcagccgtggagttagaagaacctgaggatgccagg
atcatgctgagtcgggctgtggagtgctgtccgactagcgttgaactgtggcttgcgctg
gcaaggctggagacatatgagaatgctcgtaaagtccttaacaaagcccgtgagaatatt
ccgacggatcgtcacatctggattactgctgccaaactggaggaagccaatggaaacacc
cagatggtggagaaaatcattgacagagccatcacatctcttagggctaacggtgtggaa
atcaacagagagcaatggatacaggatgctgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgcgagctgtgattgggattgggattgaggaagaagatcggaaa
catacctggatggaagatgcagacagttgtgttgctcataatgctctggagtgtgctcga
gcaatttatgcttatgccttgcaagttttcccgagcaagaagagtgtgtggctgcgagca
gcgtactttgaaaagaaccacggaacgagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcagaagtgctctggctcatgggagccaaatcgaagtggctg
gcaggagatgtgccagcagccagaagcattttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagcttgagtcagaaaacaatgagtatgaaaga
gcgaggaggctgctggcaaaagcccgcagcagtgcccccactgcaagggtcttcatgaag
tctgtgaagttagagtgggtgcttgggaacattgctgcagcccaggagctttgtgaggaa
gccctgaagcactacgaggacttccccaaactgtggatgatgaagggacaaatcgaggaa
caaaaggagcttgtagagaaggcacgggaggcttataatcaagggttgaaaaaatgcccc
cattccatacccctgtggcttttgctgtccaggctggaggagaaagttgggcagttgact
agagcaagagccatcttggaaaagtctcgcctaaagaatccaaagaatccggatctctgg
ttagagtctgtgcgattggagtacagagctgggctaaagaatattgcaaatactctgatg
gccaaggcattgcaagaatgccccaattcaggaatcctgtggtcagaggcaattttcctt
gaagcgcgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgac
ccacatgtcctgttggctgtggccaagctattctggagcgaacgtaaaataaccaaggcc
cgagaatggttccaccgaacggtgaagatagactctgaccttggggatgcctgggctttc
ttttataaatttgagctgcagcacggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgctgaacctcgccacggagagctctggtgtgatgtctccaaggacatagag
aactggcagaaaaagatcggagagattctcgtgcttgtggcagccaagcttaaaaatacc
ttctag
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